Detailed information NTG0696249

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP19_RS15250
• Genome accession: NZ_CP115215
• Coordinates: 3256144..3257148 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F062
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3251144..3262148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP19_RS15220 (PCP19_15210)	fghA	3251236..3252087 (+)	852	WP_003113869.1	S-formylglutathione hydrolase	-
PCP19_RS15225 (PCP19_15215)	ispF	3252158..3252631 (+)	474	WP_023465018.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP19_RS15230 (PCP19_15220)	truD	3252628..3253695 (+)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
PCP19_RS15235 (PCP19_15225)	surE	3253683..3254432 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP19_RS15240 (PCP19_15230)	-	3254465..3255100 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP19_RS15245 (PCP19_15235)	-	3255146..3256039 (+)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP19_RS15250 (PCP19_15240)	rpoS	3256144..3257148 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP19_RS15255 (PCP19_15245)	fdxA	3257575..3257898 (-)	324	WP_003092272.1	ferredoxin FdxA	-
PCP19_RS15260 (PCP19_15250)	mutS	3257965..3260532 (-)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
PCP19_RS15265 (PCP19_15255)	-	3260658..3261665 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=696249 PCP19_RS15250 WP_003113871.1 3256144..3257148(+) (rpoS) [Pseudomonas aeruginosa strain F062]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=696249 PCP19_RS15250 WP_003113871.1 3256144..3257148(+) (rpoS) [Pseudomonas aeruginosa strain F062]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653