Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   UNDYM_RS02385 Genome accession   NZ_AP018441
Coordinates   494927..496417 (-) Length   496 a.a.
NCBI ID   WP_162039596.1    Uniprot ID   A0A809QWK1
Organism   Undibacterium sp. YM2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 489927..501417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UNDYM_RS02365 (UNDYM_0477) - 490395..491123 (+) 729 WP_162039592.1 ABC transporter ATP-binding protein -
  UNDYM_RS02370 (UNDYM_0478) - 491252..492202 (+) 951 WP_162039593.1 S9 family peptidase -
  UNDYM_RS02375 (UNDYM_0479) - 492679..493773 (-) 1095 WP_162039594.1 enoyl-CoA hydratase/isomerase family protein -
  UNDYM_RS02380 (UNDYM_0480) hpf 494472..494819 (-) 348 WP_162039595.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  UNDYM_RS02385 (UNDYM_0481) rpoN/rpoN1 494927..496417 (-) 1491 WP_162039596.1 RNA polymerase factor sigma-54 Machinery gene
  UNDYM_RS02390 (UNDYM_0482) lptB 496429..497184 (-) 756 WP_162039597.1 LPS export ABC transporter ATP-binding protein -
  UNDYM_RS02395 (UNDYM_0483) - 497186..497755 (-) 570 WP_162039598.1 LptA/OstA family protein -
  UNDYM_RS02400 (UNDYM_0484) lptC 497770..498414 (-) 645 WP_162039599.1 LPS export ABC transporter periplasmic protein LptC -
  UNDYM_RS02405 (UNDYM_0485) - 498411..498944 (-) 534 WP_162039600.1 HAD family hydrolase -
  UNDYM_RS02410 (UNDYM_0486) - 498944..499984 (-) 1041 WP_162039601.1 SIS domain-containing protein -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 55305.04 Da        Isoelectric Point: 5.1894

>NTDB_id=69622 UNDYM_RS02385 WP_162039596.1 494927..496417(-) (rpoN/rpoN1) [Undibacterium sp. YM2]
MKQSLQLRTSQHLALTPQLQQSIRLLQLSTLELHQELETLLTDNPMLERVDDPLDHAVRLLADGAINTSSTSADAGMEAP
AAREDSDKSAEPAAADAETVISNDSTTSSEEDWGFDDVQHGSKSGDDEDGRPQLGAAHITLREHLLEQMRLNLREPRDRA
LVELMIDALDNNGYLTETLDEIHASLPLELCVEPEELAFALNMLQSFDPAGVGARSPSECLALQIRRLPKVAFVTRRLAL
QIVETQLTLFAQRDFTKLKKIFDCDDEDLRDAQTVIRLCKPRPGLAFAADESDYVVPDVIVRKSGNGWQVMLNQDVMPRL
RVSSMYANIMKQNRGEAGMGAQLQEARWLIKNMRQRFETILRVAQAIVERQRNFFTHGAVAMRPLVLREIADTLGLHEST
ISRVTTQKYMLTPHGMFELKYFFGSHVATETGGEASSTAIRALIKQLIGAEDQKSPLSDSKIADMLGEQGMVIARRTVAK
YREALKIPPVSLRKSL

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=69622 UNDYM_RS02385 WP_162039596.1 494927..496417(-) (rpoN/rpoN1) [Undibacterium sp. YM2]
ATGAAACAAAGCCTGCAACTACGTACCTCACAACATCTGGCCTTAACGCCGCAATTGCAGCAATCGATACGATTATTGCA
GTTATCCACTTTGGAATTGCATCAGGAGCTGGAGACGCTGCTGACCGATAATCCCATGCTGGAACGCGTCGATGATCCCC
TCGATCACGCCGTACGCCTGCTGGCCGACGGTGCCATCAATACCAGCAGTACTTCTGCCGATGCCGGCATGGAAGCACCG
GCAGCAAGAGAAGACAGTGACAAGTCAGCAGAACCGGCTGCCGCTGATGCAGAAACCGTCATCAGCAATGACAGCACCAC
CTCCAGCGAAGAAGACTGGGGCTTTGATGATGTGCAGCATGGCAGCAAGTCTGGCGATGATGAAGATGGCCGCCCCCAGC
TCGGTGCAGCCCATATCACCCTGCGTGAACACTTGCTGGAACAGATGCGCCTGAACCTGCGCGAACCGCGTGACCGTGCC
CTGGTCGAGCTGATGATCGATGCGCTCGACAATAACGGTTACCTGACCGAAACATTAGATGAAATACATGCCAGTTTGCC
ACTGGAACTGTGCGTAGAACCAGAAGAACTGGCGTTTGCGCTGAACATGCTGCAAAGCTTTGATCCCGCAGGTGTCGGTG
CGCGCAGCCCGTCTGAATGCCTGGCCTTGCAAATCAGGCGTTTACCAAAAGTTGCTTTCGTCACACGCAGACTGGCATTG
CAAATTGTTGAAACGCAACTGACTTTATTTGCACAAAGAGATTTCACCAAACTCAAGAAAATCTTCGACTGCGACGATGA
AGATTTGCGCGATGCACAAACTGTCATTCGCCTGTGCAAACCACGCCCCGGCCTGGCCTTTGCTGCTGATGAATCTGACT
ATGTCGTACCTGATGTGATCGTCAGAAAATCCGGTAACGGCTGGCAAGTCATGCTGAATCAGGATGTCATGCCCAGGCTG
CGGGTAAGCAGCATGTATGCCAACATCATGAAGCAAAACCGTGGCGAAGCTGGCATGGGCGCACAATTGCAGGAAGCACG
CTGGCTGATCAAGAATATGCGGCAACGTTTTGAGACTATATTGCGCGTTGCACAAGCGATAGTCGAAAGGCAACGCAATT
TTTTCACCCACGGTGCTGTTGCAATGCGCCCCCTTGTTTTGCGCGAAATTGCTGATACACTAGGATTACACGAGAGCACT
ATCTCACGTGTAACAACCCAAAAATACATGTTGACCCCACATGGCATGTTTGAGTTGAAGTACTTTTTCGGCAGCCATGT
CGCGACGGAAACAGGGGGTGAAGCTTCTTCCACCGCGATACGTGCACTCATCAAGCAGTTGATAGGAGCAGAAGACCAGA
AAAGCCCACTCTCTGATAGCAAAATTGCAGACATGCTGGGTGAACAGGGCATGGTAATTGCCCGACGGACAGTTGCCAAA
TACCGTGAAGCCCTCAAAATCCCCCCAGTGAGTTTGCGTAAATCTTTGTAA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(136-326)

Sigma-54, DNA binding domain (Sigma54_DBD)

(341-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809QWK1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

60.956

100

0.617

Multiple sequence alignment