Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NC657_RS14005 Genome accession   NZ_CP098482
Coordinates   3351783..3353150 (-) Length   455 a.a.
NCBI ID   WP_005784538.1    Uniprot ID   A0A015YPZ3
Organism   Bacteroides fragilis strain 86-5443-2-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3346783..3358150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC657_RS13990 (NC657_13990) - 3349118..3349714 (-) 597 WP_011202071.1 response regulator transcription factor -
  NC657_RS13995 (NC657_13995) - 3349722..3351311 (-) 1590 WP_005784534.1 NAD(P)/FAD-dependent oxidoreductase -
  NC657_RS14000 (NC657_14000) - 3351356..3351727 (-) 372 WP_032572509.1 GxxExxY protein -
  NC657_RS14005 (NC657_14005) radA 3351783..3353150 (-) 1368 WP_005784538.1 DNA repair protein RadA Machinery gene
  NC657_RS14010 (NC657_14010) - 3353808..3354857 (-) 1050 WP_032589154.1 asparaginase -
  NC657_RS14015 (NC657_14015) thrA 3355351..3357786 (+) 2436 WP_005784545.1 bifunctional aspartate kinase/homoserine dehydrogenase I -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 50242.96 Da        Isoelectric Point: 6.3244

>NTDB_id=696183 NC657_RS14005 WP_005784538.1 3351783..3353150(-) (radA) [Bacteroides fragilis strain 86-5443-2-2]
MAKEKTVYVCSNCGQESPKWVGKCPSCGEWNTYVEEIVRKEVPNKRPVSGIESPKAKPVTLSEIEADEEPRIDMHDEELN
RVLGGGLVPGSLVLIGGEPGIGKSTLVLQTVLHMPERRILYISGEESARQLKLRADRLTRTSSDCLIVCETSLEQIYVHI
KNTRPDLVIIDSIQTISTESIESSPGSIAQVRECSASILRFAKETHTPVLLIGHINKEGSIAGPKVLEHIVDTVLQFEGD
QHYMYRILRSIKNRFGSTAELGIYEMRQDGLRQVSNPSELLLSQDHEGMSGVAIASAIEGVRPFLIETQALVSSAVYGNP
QRSATGFDIRRMNMLLAVLEKRVGFKLAQKDVFLNIAGGLKVNDPAIDLAVISAILSSNMDAAIEPEVCMAGEIGLSGEI
RPVNRIEQRIGEAEKLGFKRFILPKYNMQGIDTKKLRIELVPVRKVEEAFRTLFG

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=696183 NC657_RS14005 WP_005784538.1 3351783..3353150(-) (radA) [Bacteroides fragilis strain 86-5443-2-2]
ATGGCAAAAGAGAAAACCGTTTATGTATGCAGTAACTGCGGACAGGAATCACCCAAATGGGTGGGCAAATGTCCTTCGTG
TGGCGAATGGAATACCTATGTAGAAGAGATTGTTCGCAAGGAAGTTCCGAATAAACGTCCGGTATCAGGCATCGAATCGC
CCAAAGCCAAACCCGTCACCCTGAGCGAGATCGAAGCAGATGAAGAACCCCGCATCGACATGCACGACGAGGAGCTGAAC
CGGGTGCTGGGAGGCGGGCTGGTACCCGGATCGCTGGTACTGATCGGTGGCGAACCCGGCATCGGGAAGTCCACACTGGT
GCTCCAAACCGTACTCCACATGCCTGAGCGGAGGATACTCTACATCTCGGGAGAAGAGAGCGCAAGGCAACTGAAACTTC
GTGCCGACCGGTTAACCCGAACTTCGAGCGACTGTCTGATTGTCTGCGAAACATCGTTGGAACAGATCTATGTACATATC
AAGAATACACGTCCGGACCTAGTAATCATCGACTCCATACAGACGATATCGACCGAAAGCATCGAATCGTCACCGGGAAG
CATCGCGCAAGTCCGGGAGTGCTCGGCATCCATCCTCCGTTTTGCCAAAGAGACGCATACCCCGGTGTTGCTGATCGGGC
ATATCAACAAAGAAGGCAGCATTGCCGGACCGAAGGTTCTAGAGCACATCGTAGACACCGTACTCCAATTCGAGGGAGAC
CAGCATTATATGTACCGTATCCTGCGCAGCATCAAGAACCGCTTTGGAAGTACGGCTGAATTGGGCATCTATGAAATGCG
TCAAGACGGGCTTCGCCAAGTCAGCAACCCTTCGGAATTGTTACTGTCGCAGGACCACGAAGGCATGAGCGGGGTAGCCA
TCGCATCTGCCATCGAAGGGGTAAGACCCTTCCTGATAGAGACGCAAGCACTTGTCAGCTCTGCGGTTTACGGCAACCCG
CAACGTTCGGCAACGGGATTCGATATTCGCCGCATGAACATGCTGCTGGCCGTATTAGAGAAACGTGTCGGATTTAAGCT
GGCACAAAAAGATGTCTTTCTAAATATTGCCGGAGGACTGAAGGTTAACGACCCTGCCATCGACCTGGCTGTTATCAGTG
CCATCCTTTCATCCAATATGGATGCTGCCATCGAACCTGAGGTTTGCATGGCCGGAGAAATCGGATTATCCGGTGAAATC
CGTCCGGTAAACCGGATCGAACAACGTATCGGTGAAGCTGAGAAGCTCGGGTTCAAACGGTTCATCCTACCTAAATACAA
CATGCAGGGCATCGATACAAAGAAGCTGAGGATAGAACTGGTGCCGGTAAGAAAGGTGGAAGAAGCATTCCGGACGCTCT
TCGGGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(71-219)

Subunit ChlI of Mg-chelatase (ChlI)

(341-427)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A015YPZ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

51.965

100

0.523
  radA Streptococcus mitis SK321

48.352

100

0.484
  radA Streptococcus mitis NCTC 12261

48.352

100

0.484
  radA Streptococcus pneumoniae Rx1

48.352

100

0.484
  radA Streptococcus pneumoniae D39

48.352

100

0.484
  radA Streptococcus pneumoniae R6

48.352

100

0.484
  radA Streptococcus pneumoniae TIGR4

48.352

100

0.484