Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   NDN13_RS17015 Genome accession   NZ_CP098480
Coordinates   3563786..3564673 (+) Length   295 a.a.
NCBI ID   WP_251116301.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3558786..3569673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS16985 (NDN13_16980) - 3558874..3559383 (-) 510 WP_159413829.1 dihydrofolate reductase -
  NDN13_RS16990 (NDN13_16985) thyA 3559409..3560251 (-) 843 WP_251116298.1 thymidylate synthase -
  NDN13_RS16995 (NDN13_16990) - 3560423..3561247 (+) 825 WP_251116299.1 YwqG family protein -
  NDN13_RS17000 (NDN13_16995) - 3561298..3561873 (-) 576 WP_004655958.1 xanthine phosphoribosyltransferase -
  NDN13_RS17005 (NDN13_17000) - 3561962..3562666 (-) 705 WP_101237617.1 DUF3108 domain-containing protein -
  NDN13_RS17010 (NDN13_17005) - 3562863..3563543 (-) 681 WP_251116300.1 hypothetical protein -
  NDN13_RS17015 (NDN13_17010) tonB2 3563786..3564673 (+) 888 WP_251116301.1 TonB family protein Machinery gene
  NDN13_RS17020 (NDN13_17015) - 3564961..3567111 (+) 2151 WP_251116302.1 TonB-dependent siderophore receptor -
  NDN13_RS17025 (NDN13_17020) - 3567183..3567482 (-) 300 WP_251116303.1 antibiotic biosynthesis monooxygenase -
  NDN13_RS17030 (NDN13_17025) ybeY 3567494..3567979 (-) 486 WP_004802582.1 rRNA maturation RNase YbeY -
  NDN13_RS17035 (NDN13_17030) - 3568265..3569338 (-) 1074 WP_251116304.1 PhoH family protein -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33564.22 Da        Isoelectric Point: 8.3636

>NTDB_id=696176 NDN13_RS17015 WP_251116301.1 3563786..3564673(+) (tonB2) [Acinetobacter sp. C32I]
MWNKINFRSELSPYWWQDPIFVGAVALAMLLHGAVLAIQFTMPSPSDTSTKEIAVTVRPSQEKVKDADFLAQADQHGSGD
FREAHRMSSDMPAPMQADATTGEKELESLEKIQQKRELKFEEKVLMTVLSWQKQAEQSERKKTLDDLQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDQAKQQRLAGEVRLMVILNAEGGIRAIRL
IESSGHAILDEAAKASVRRGAPFGPFDATMKKEISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=696176 NDN13_RS17015 WP_251116301.1 3563786..3564673(+) (tonB2) [Acinetobacter sp. C32I]
ATGTGGAATAAAATAAATTTTCGTTCAGAACTGTCTCCTTATTGGTGGCAAGATCCAATTTTTGTTGGGGCAGTGGCTTT
GGCGATGCTTTTGCATGGGGCGGTGTTGGCGATTCAATTTACCATGCCATCGCCCTCGGATACTTCGACCAAAGAAATCG
CGGTCACCGTTCGTCCAAGTCAGGAAAAAGTCAAAGATGCTGACTTTTTGGCGCAAGCCGATCAACACGGCTCAGGTGAT
TTCCGTGAAGCACATCGGATGTCGAGCGATATGCCTGCACCGATGCAAGCCGATGCGACCACGGGCGAAAAAGAATTAGA
AAGTCTGGAAAAAATTCAGCAAAAACGGGAGTTGAAATTCGAAGAAAAAGTGCTCATGACAGTTCTGAGTTGGCAAAAGC
AAGCCGAGCAGAGCGAACGTAAAAAAACCTTGGATGATCTACAAAGTCAGTTTCAAGCCAAAGCTGCCATGGTGGCGAGT
CTGGAAGCGCAATATTTACAGCGTCAACAAAATTTTAGCCGTAAACAACGGATTAAAACGGTCGATGGGATTCAGGCTAA
ACAAGATGCATCTGCTGCTTACCTAGATAAATTTCGCCAAAAAGTCGAGTTATATGGGAATCGCTATTATCCTGATCAAG
CCAAACAACAACGTTTGGCGGGTGAAGTGCGTCTCATGGTAATTTTGAATGCTGAAGGGGGAATTCGAGCGATTCGTCTC
ATTGAAAGTTCTGGGCATGCGATTTTAGACGAAGCTGCTAAAGCATCGGTTCGCCGTGGTGCACCATTTGGACCCTTTGA
TGCCACGATGAAAAAAGAAATCTCTGAGTTGCGCATTATTCGGACTTGGCGTTTTGATCCAGTCGATGCTGAATTTGAAG
TGCACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

78.723

95.593

0.753