Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   NDN13_RS16450 Genome accession   NZ_CP098480
Coordinates   3453376..3455616 (-) Length   746 a.a.
NCBI ID   WP_251118255.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3448376..3460616
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS16430 (NDN13_16425) - 3448624..3449568 (-) 945 WP_251116224.1 DnaJ C-terminal domain-containing protein -
  NDN13_RS16435 (NDN13_16430) - 3449711..3450322 (-) 612 WP_004802380.1 LysE family translocator -
  NDN13_RS16440 (NDN13_16435) hslO 3450441..3451316 (-) 876 WP_251116225.1 Hsp33 family molecular chaperone HslO -
  NDN13_RS16445 (NDN13_16440) - 3451435..3453255 (-) 1821 WP_251116226.1 cation:proton antiporter -
  NDN13_RS16450 (NDN13_16445) priA 3453376..3455616 (-) 2241 WP_251118255.1 primosomal protein N' Machinery gene
  NDN13_RS16455 (NDN13_16450) gspF 3455763..3456968 (+) 1206 WP_005200431.1 type II secretion system inner membrane protein GspF -
  NDN13_RS16460 (NDN13_16455) gspG 3456986..3457528 (+) 543 WP_285292157.1 type II secretion system major pseudopilin GspG -
  NDN13_RS16465 (NDN13_16460) - 3457793..3458137 (+) 345 WP_171550408.1 hypothetical protein -
  NDN13_RS16470 (NDN13_16465) - 3458194..3458457 (-) 264 WP_005200416.1 DUF2798 domain-containing protein -
  NDN13_RS16475 (NDN13_16470) - 3458703..3459041 (+) 339 WP_026057580.1 tRNA-binding protein -
  NDN13_RS16480 (NDN13_16475) lnt 3459043..3460602 (-) 1560 WP_251116227.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 84688.67 Da        Isoelectric Point: 8.6614

>NTDB_id=696175 NDN13_RS16450 WP_251118255.1 3453376..3455616(-) (priA) [Acinetobacter sp. C32I]
MNEAYMPSQNSNAILYRIRVAIPVYVYDTFDYTVSAEQYAQAQIGARVAISFGRQNLVGIITEKVDPHEVFTGQFKLKAI
TELLDQETILDQQVLTLLTWSAQYYQFPIGEVMQSALPSLLRQGRALDILFHLWKITPHEDPASLLKRSQKQYDAYQVLK
LHPHGTTENVLNLSGVETSTLKALEKKGLVECCLEPHDFTPTPVQLAQVPLTPNDDQKKAIQQILKAQHHYQAFLLDGLT
GSGKTEVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSA
IYTPLPQLGLIILDEEHDLSFKQQEGFRYHTRDVALYRGHLQNCPVILGSATPSIDSYHLVESGKLHLLELNQRAGVAVL
PKMHVVDLKIAKKKHGLSQTLIEQIKHTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSRPYHYLHCHH
CGTINRLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHNEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKG
HHFPHVTLVAILDIDAGLLSVDPRAPERTAQLIVQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEHDYRTVAKQMLADR
KIAMLPPYRYAVLVRVESKDRDYSQQFLADIAQQLRAMAGEIVDIWGPIPAPMERKAGRYRAHMVILSSDRAKLHFYLRQ
WWQHVVHLPRQHLLRLSIDVDPQEFS

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=696175 NDN13_RS16450 WP_251118255.1 3453376..3455616(-) (priA) [Acinetobacter sp. C32I]
ATGAATGAAGCCTATATGCCTAGCCAAAATTCTAACGCTATTCTCTACCGTATTCGAGTCGCGATACCCGTCTATGTGTA
TGACACCTTTGACTATACAGTCAGTGCTGAGCAATATGCACAGGCACAAATTGGTGCACGCGTTGCCATTTCTTTTGGGC
GGCAAAACCTCGTGGGAATTATTACTGAAAAAGTAGATCCTCACGAAGTATTTACAGGACAATTCAAACTTAAGGCCATC
ACAGAATTACTCGATCAGGAAACGATTCTAGACCAACAAGTTTTAACTTTGTTGACATGGTCAGCACAATATTACCAATT
CCCGATTGGTGAAGTGATGCAAAGTGCCCTGCCCAGCTTATTAAGACAAGGGCGTGCCTTAGATATTCTATTTCATTTAT
GGAAGATCACACCCCATGAAGACCCGGCCTCTTTATTAAAACGCTCTCAAAAACAATACGATGCTTATCAGGTTTTAAAG
CTGCATCCACACGGCACCACTGAAAATGTGCTCAATCTAAGTGGTGTAGAAACCTCAACCCTGAAAGCATTGGAAAAGAA
AGGCTTGGTTGAGTGCTGTCTGGAACCGCATGATTTCACCCCAACACCCGTGCAACTGGCGCAAGTACCATTAACCCCCA
ATGACGATCAGAAAAAAGCCATTCAACAGATCCTTAAAGCACAGCATCATTATCAAGCCTTTTTACTTGATGGCCTGACT
GGAAGTGGCAAAACTGAAGTCTATTTGCAAGTCATGCATGAGGTGTTAAAACAAGGCAAACAAGTATTGGTGCTGGTGCC
TGAAATTGGCCTGACGCCACAAACAGTCGCTCGTTTTAAGTCACGTTTTCATTGTGATGTGGCCTTATTGCATTCAGGCT
TAAATGACTCGAAACGCCTACAAGCTTGGCAACATGCGCAAACGGGCAAAGCCTCGATTATTATTGGCACACGTTCCGCA
ATTTATACCCCACTTCCTCAGCTGGGTTTAATCATCTTGGATGAGGAACATGATCTCTCTTTTAAGCAGCAAGAAGGTTT
TCGTTACCATACCCGTGATGTGGCCCTATATCGTGGACATTTGCAGAATTGCCCCGTCATTCTCGGCTCTGCCACACCGA
GTATCGACAGTTATCACTTGGTCGAATCGGGCAAGTTACATTTGCTTGAGTTAAATCAACGGGCAGGCGTGGCGGTACTG
CCGAAGATGCATGTCGTGGACTTAAAAATCGCAAAAAAGAAGCACGGACTCAGCCAAACGCTCATCGAACAGATCAAGCA
TACATTAGAGCGTAAAGAACAAGTGCTGATCTTTCTAAATCGACGCGGCTATGCACCGATCCTGATGTGTGAAAGCTGTG
GTTGGCAAGCCAACTGCCCACATTGTGATGCGCATTTTACTTTGCATTCACGGCCCTACCATTATTTACATTGCCATCAC
TGCGGCACCATCAATCGCCTGCCTGATCATTGTCCTGCCTGTCAGAAGCAAAGCTTAAAAACCATTGGTGCAGGCACGGC
AAAGCTTGAAGAACACTTACAAGAATTGTTTCCTCACAATGAGGTGATTCGAGTTGATCGGGACAGCACCAGTCGAGTGG
GGAGCTGGCAAAAGATCTATGATCGCATTCAGCAAAATAAGCCCAGTATTTTATTGGGCACACAAATGCTGGCCAAAGGG
CATCATTTCCCGCATGTGACGCTGGTTGCGATTTTAGATATTGATGCCGGACTGCTCAGTGTTGACCCACGTGCACCTGA
GCGAACCGCACAACTGATTGTACAGGTCGCCGGCCGTGCTGGTCGGGGCGAGCATAAAGGCAGTGTCTATTTACAGAGTC
TGCGCCCTGATCACCCGATGTTGACCACTTTAATTGAGCATGACTACCGCACGGTCGCCAAACAAATGCTGGCTGATCGC
AAAATCGCGATGTTACCACCCTATCGCTATGCAGTATTGGTTCGGGTTGAATCTAAAGATCGCGACTATAGCCAACAATT
CTTAGCAGATATTGCCCAACAGCTGAGAGCAATGGCAGGCGAGATCGTCGATATTTGGGGACCGATTCCCGCACCGATGG
AACGTAAAGCAGGCCGTTATCGTGCACATATGGTGATTTTGTCTAGCGATCGAGCAAAACTGCATTTTTATTTGCGCCAA
TGGTGGCAACACGTCGTACACTTACCTCGCCAGCACCTACTGAGACTCTCGATTGATGTTGATCCGCAAGAGTTTAGTTA
G

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(19-118)

Primosomal protein N C-terminal domain (PriA_C)

(647-742)

DEAD/DEAH box helicase (DEAD)

(215-376)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

82.041

98.525

0.808