Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   NDN13_RS15935 Genome accession   NZ_CP098480
Coordinates   3337253..3337579 (+) Length   108 a.a.
NCBI ID   WP_004656310.1    Uniprot ID   A0A653K7L0
Organism   Acinetobacter sp. C32I     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3332253..3342579
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS15910 (NDN13_15905) hemC 3332699..3333616 (+) 918 WP_251116157.1 hydroxymethylbilane synthase -
  NDN13_RS15915 (NDN13_15910) - 3333616..3334392 (+) 777 WP_251116158.1 uroporphyrinogen-III synthase -
  NDN13_RS15920 (NDN13_15915) - 3334389..3335216 (+) 828 WP_251116159.1 hypothetical protein -
  NDN13_RS15925 (NDN13_15920) - 3335223..3336416 (+) 1194 WP_251116160.1 heme biosynthesis protein HemY -
  NDN13_RS15930 (NDN13_15925) - 3336425..3336856 (+) 432 WP_251116161.1 thioesterase family protein -
  NDN13_RS15935 (NDN13_15930) hns 3337253..3337579 (+) 327 WP_004656310.1 H-NS histone family protein Regulator
  NDN13_RS15940 (NDN13_15935) gspN 3337757..3338500 (+) 744 WP_251116162.1 type II secretion system protein N -
  NDN13_RS15945 (NDN13_15940) - 3338500..3339339 (+) 840 WP_251116163.1 type II secretion system protein N -
  NDN13_RS15950 (NDN13_15945) gspD 3339380..3341656 (+) 2277 WP_251116164.1 type II secretion system secretin GspD -
  NDN13_RS15955 (NDN13_15950) - 3341720..3342337 (+) 618 WP_251116165.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12258.92 Da        Isoelectric Point: 5.0269

>NTDB_id=696171 NDN13_RS15935 WP_004656310.1 3337253..3337579(+) (hns) [Acinetobacter sp. C32I]
MKPDISDLSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIADAIGYSVEELLEVGEQKRKKTTRKAVEPRYRNKSNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=696171 NDN13_RS15935 WP_004656310.1 3337253..3337579(+) (hns) [Acinetobacter sp. C32I]
ATGAAACCAGATATTAGCGATTTGTCTGTAGAAGATTTAAAGCGTTTACAAGCAGAAGCAGAAGCTTTGATTGCAAGTAA
AAAAGACCAAGCAATTGAAGATGCGTATAATCAAATTATCGCCATTGCAGATGCGATCGGTTATAGCGTTGAAGAGTTAT
TGGAAGTCGGCGAGCAAAAGCGTAAGAAAACCACGCGTAAAGCAGTAGAGCCGCGCTACCGTAACAAGAGCAATGCTGAA
GAGACTTGGACTGGCCGTGGTAAGCAACCACGTTGGTTAGTTGCTGAATTAGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A653K7L0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

87.037

100

0.87