Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   NDN13_RS15390 Genome accession   NZ_CP098480
Coordinates   3221782..3222933 (-) Length   383 a.a.
NCBI ID   WP_251116087.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3216782..3227933
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS15370 (NDN13_15365) - 3217970..3218614 (+) 645 WP_016164819.1 TetR/AcrR family transcriptional regulator -
  NDN13_RS15375 (NDN13_15370) - 3218718..3219638 (+) 921 WP_251118247.1 DMT family transporter -
  NDN13_RS15380 (NDN13_15375) - 3220032..3220601 (-) 570 WP_251116085.1 Sua5/YciO/YrdC/YwlC family protein -
  NDN13_RS15385 (NDN13_15380) dprA 3220638..3221771 (-) 1134 WP_251116086.1 DNA-processing protein DprA Machinery gene
  NDN13_RS15390 (NDN13_15385) tsaP 3221782..3222933 (-) 1152 WP_251116087.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NDN13_RS15395 (NDN13_15390) def 3223056..3223586 (+) 531 WP_005319693.1 peptide deformylase -
  NDN13_RS15400 (NDN13_15395) - 3223606..3224043 (+) 438 WP_171552425.1 DUF2946 family protein -
  NDN13_RS15405 (NDN13_15400) - 3224119..3226221 (+) 2103 WP_251116088.1 TonB-dependent copper receptor -
  NDN13_RS15410 (NDN13_15405) - 3226288..3227475 (+) 1188 WP_251116089.1 hypothetical protein -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41896.03 Da        Isoelectric Point: 9.4198

>NTDB_id=696166 NDN13_RS15390 WP_251116087.1 3221782..3222933(-) (tsaP) [Acinetobacter sp. C32I]
MKKVLNGIHSFHALGLKKQLIAAAICAGLGMSVNFAHAASPNVSPPSVKVGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGNTSNLRPQVRVEALNNSVPVIPLAHIQQWLER
TSVLPAEAIANTPYILGTADNRVLAGKGQSVYVRGKGLENGQRYGVFREGEPYIVLDQNGKKQNLGVELTQVASAVAIRN
ENDITTVELTDSYNGEVRRGDRVMAEQDAMLPTLFYPIDANQVKDGGKIIRVMGSIGTAAKNGVVTVDRGTTDGVEIGQV
FSVYQDGEVVRDPKTKEKVKLPGQYLGSAMIFKSFDRISYAYILESELPIKLGSDIKPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=696166 NDN13_RS15390 WP_251116087.1 3221782..3222933(-) (tsaP) [Acinetobacter sp. C32I]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTGATTGCTGCAGCAATTTGTGC
AGGTTTGGGGATGAGCGTGAATTTCGCCCATGCAGCCAGCCCAAATGTCAGTCCACCTTCGGTCAAAGTGGGGGCACCGC
ATGTTTATGTGGTGAAAAAAGGCGATACACTTTGGGATATCTCAGGGAAGTTTTTAAGTAAGCCTTGGCGTTGGCCAGAA
ATTTGGGCAAGCAATAAGCATGTGAAAAATCCGCATTGGATTTATCCAGGCGATCGCTTACTGCTATGCAGTTTGAACGG
TAAACCCTTAATCGGTAAGGATGAGGGGGATGGCTGTGACGGGATTATTCGCCGCTATACAGGTAATACCTCAAACCTAC
GTCCGCAAGTCCGTGTTGAAGCCTTGAATAATAGTGTTCCTGTTATTCCTTTGGCACATATTCAGCAATGGTTAGAGCGT
ACTTCGGTCCTGCCAGCAGAGGCGATTGCCAATACCCCTTATATCTTGGGTACAGCAGACAACCGCGTACTTGCAGGTAA
AGGCCAAAGTGTATATGTGCGTGGTAAAGGCCTTGAAAACGGTCAACGTTATGGTGTATTCCGTGAAGGTGAACCGTACA
TCGTATTAGACCAAAATGGCAAGAAACAGAATCTTGGGGTTGAGCTGACACAAGTGGCTTCGGCTGTTGCCATTCGCAAT
GAAAATGACATCACCACAGTTGAACTTACCGATAGTTATAACGGTGAAGTTCGTCGTGGCGATCGGGTTATGGCTGAACA
GGATGCCATGCTACCAACCTTATTTTACCCAATTGATGCCAATCAGGTAAAAGACGGCGGCAAAATCATCCGTGTGATGG
GTTCAATTGGTACAGCTGCCAAAAATGGCGTGGTCACCGTTGATCGTGGCACTACTGATGGCGTTGAAATTGGTCAAGTG
TTCAGTGTCTATCAAGATGGTGAAGTAGTCCGAGATCCGAAAACTAAAGAAAAAGTGAAACTCCCTGGACAATATCTAGG
TAGCGCCATGATCTTTAAGAGTTTTGATCGTATCAGCTATGCCTATATCCTTGAGAGCGAGCTACCGATCAAGCTTGGCT
CGGATATTAAGCCACCTCGTTTAGATGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.833

100

0.71