Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   NDN13_RS12795 Genome accession   NZ_CP098480
Coordinates   2672342..2672776 (-) Length   144 a.a.
NCBI ID   WP_251115723.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2667342..2677776
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS12775 (NDN13_12770) pilX 2669138..2669890 (-) 753 WP_251115719.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  NDN13_RS12780 (NDN13_12775) - 2669887..2670912 (-) 1026 WP_251115720.1 PilW family protein -
  NDN13_RS12785 (NDN13_12780) pilV 2670914..2671402 (-) 489 WP_251115721.1 type IV pilus modification protein PilV Machinery gene
  NDN13_RS12790 (NDN13_12785) - 2671399..2671965 (-) 567 WP_251115722.1 GspH/FimT family pseudopilin -
  NDN13_RS12795 (NDN13_12790) pilE 2672342..2672776 (-) 435 WP_251115723.1 type IV pilin protein Machinery gene
  NDN13_RS12800 (NDN13_12795) - 2672776..2673342 (-) 567 WP_251115724.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NDN13_RS12805 (NDN13_12800) - 2673344..2677459 (-) 4116 WP_251115725.1 hypothetical protein -

Sequence

Protein


Download         Length: 144 a.a.        Molecular weight: 15493.80 Da        Isoelectric Point: 9.8953

>NTDB_id=696155 NDN13_RS12795 WP_251115723.1 2672342..2672776(-) (pilE) [Acinetobacter sp. C32I]
MKYKYGFTLVELMIVVAIIAILATVAYPSYQQYVKRTKRTDAQSEMMLIAHTLNQFKVTRGTYTGAALTGAFGVYGSSVT
PKSGAPLYDLTLTTTASTWTLTAAPKTNTAQMGDGSIVLNSLGQKCWTKGSSCTPTATSNWDGR

Nucleotide


Download         Length: 435 bp        

>NTDB_id=696155 NDN13_RS12795 WP_251115723.1 2672342..2672776(-) (pilE) [Acinetobacter sp. C32I]
GTGAAATATAAATACGGATTTACACTTGTAGAGTTAATGATTGTTGTAGCCATAATTGCGATTTTGGCTACAGTGGCTTA
TCCGTCATATCAGCAATATGTCAAAAGAACCAAACGAACAGATGCACAGTCTGAAATGATGTTGATCGCACATACACTCA
ACCAATTTAAAGTGACTAGAGGTACTTATACTGGTGCCGCATTGACTGGGGCATTTGGGGTGTATGGGAGTTCAGTAACG
CCAAAATCTGGTGCACCACTGTATGATCTAACACTTACGACGACAGCATCTACTTGGACATTAACAGCCGCCCCTAAAAC
TAATACGGCGCAAATGGGCGATGGAAGTATTGTATTAAATTCTTTAGGTCAAAAATGTTGGACCAAAGGTTCTAGTTGTA
CTCCTACAGCTACTTCAAATTGGGATGGTCGTTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(28-111)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

52.857

97.222

0.514
  comF Acinetobacter baylyi ADP1

42.857

100

0.437