Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   NDN13_RS12775 Genome accession   NZ_CP098480
Coordinates   2669138..2669890 (-) Length   250 a.a.
NCBI ID   WP_251115719.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2664138..2674890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS12770 (NDN13_12765) - 2664608..2669125 (-) 4518 WP_251115718.1 PilC/PilY family type IV pilus protein -
  NDN13_RS12775 (NDN13_12770) pilX 2669138..2669890 (-) 753 WP_251115719.1 pilus assembly PilX N-terminal domain-containing protein Machinery gene
  NDN13_RS12780 (NDN13_12775) - 2669887..2670912 (-) 1026 WP_251115720.1 PilW family protein -
  NDN13_RS12785 (NDN13_12780) pilV 2670914..2671402 (-) 489 WP_251115721.1 type IV pilus modification protein PilV Machinery gene
  NDN13_RS12790 (NDN13_12785) - 2671399..2671965 (-) 567 WP_251115722.1 GspH/FimT family pseudopilin -
  NDN13_RS12795 (NDN13_12790) pilE 2672342..2672776 (-) 435 WP_251115723.1 type IV pilin protein Machinery gene
  NDN13_RS12800 (NDN13_12795) - 2672776..2673342 (-) 567 WP_251115724.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27284.04 Da        Isoelectric Point: 8.4537

>NTDB_id=696153 NDN13_RS12775 WP_251115719.1 2669138..2669890(-) (pilX) [Acinetobacter sp. C32I]
MKYAQRGSTLIIVLMIVLMITIVGTLAIRQSISSLKLVSNHQIQTLLAQNADAALMYFQDPNTQQNLASANGVVGFFKNE
NNKNAELVFCFSGTDPFALSKAGYRLNSTTFEPMATNSGACRIDTSNASNDTASQSSGRKQVVTQVYIKREIAPTAPFAD
LSRGTEVLGAKTENNIRLRVYVISVMQGLLTSDALFKVDNDIKKGCLTKSIDNNGANDVATCLKQNTEKPLYNIQVAEYR
FLSDFEPSSS

Nucleotide


Download         Length: 753 bp        

>NTDB_id=696153 NDN13_RS12775 WP_251115719.1 2669138..2669890(-) (pilX) [Acinetobacter sp. C32I]
ATGAAATATGCTCAACGTGGTTCAACATTGATTATTGTGCTCATGATTGTCTTGATGATTACGATTGTAGGCACATTGGC
AATTCGTCAAAGTATCAGCTCATTGAAATTGGTGAGCAATCACCAGATACAGACACTATTGGCACAAAATGCAGATGCGG
CACTGATGTATTTTCAAGATCCAAATACACAACAAAATTTGGCTTCTGCCAATGGTGTGGTGGGATTCTTTAAAAATGAA
AATAACAAAAATGCAGAATTGGTTTTTTGTTTTTCAGGTACGGATCCATTTGCCTTGAGTAAGGCCGGGTATCGTTTAAA
TAGTACAACATTTGAACCAATGGCAACCAATAGTGGTGCCTGTAGGATCGATACCAGTAACGCAAGTAATGACACTGCCT
CTCAATCGAGTGGTCGTAAGCAGGTGGTGACACAGGTTTATATTAAAAGAGAAATAGCACCAACAGCTCCTTTTGCCGAC
TTATCCCGTGGAACGGAGGTGTTAGGGGCCAAAACTGAAAACAATATCCGTTTGCGCGTCTATGTCATCTCAGTGATGCA
AGGATTGTTAACCTCAGATGCTCTGTTTAAAGTCGATAATGATATTAAAAAAGGCTGCTTGACCAAAAGTATTGACAATA
ACGGAGCTAATGATGTCGCAACCTGTTTAAAGCAAAATACTGAAAAACCGTTATATAACATACAAGTCGCAGAATATCGT
TTCTTGTCTGACTTTGAACCTTCGAGTTCATAA

Domains

Predicted by InterproScan.

PilX N-terminal (PilX_N)

(6-55)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

51.406

99.6

0.512