Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NDN13_RS06355 Genome accession   NZ_CP098480
Coordinates   1280046..1281002 (-) Length   318 a.a.
NCBI ID   WP_251117617.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1275046..1286002
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS06330 (NDN13_06330) - 1275434..1276654 (+) 1221 WP_251117613.1 MFS transporter -
  NDN13_RS06335 (NDN13_06335) - 1276678..1277286 (-) 609 WP_251117614.1 DUF2238 domain-containing protein -
  NDN13_RS06340 (NDN13_06340) - 1277382..1278335 (-) 954 WP_251117615.1 ABC transporter substrate-binding protein -
  NDN13_RS06345 (NDN13_06345) - 1278345..1279109 (-) 765 WP_241271185.1 ATP-binding cassette domain-containing protein -
  NDN13_RS06350 (NDN13_06350) - 1279100..1280056 (-) 957 WP_251117616.1 iron chelate uptake ABC transporter family permease subunit -
  NDN13_RS06355 (NDN13_06355) ceuB 1280046..1281002 (-) 957 WP_251117617.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  NDN13_RS06360 (NDN13_06360) - 1281295..1282278 (-) 984 WP_251117618.1 ion transporter -
  NDN13_RS06365 (NDN13_06365) - 1282549..1284006 (+) 1458 WP_251117619.1 DASS family sodium-coupled anion symporter -
  NDN13_RS06370 (NDN13_06370) - 1284114..1284335 (-) 222 WP_251117620.1 hypothetical protein -
  NDN13_RS06375 (NDN13_06375) - 1284468..1285895 (-) 1428 WP_251118180.1 formylglycine-generating enzyme family protein -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34694.89 Da        Isoelectric Point: 9.8121

>NTDB_id=696143 NDN13_RS06355 WP_251117617.1 1280046..1281002(-) (ceuB) [Acinetobacter sp. C32I]
MIKRRYLILLLLPLALISLFVGVGEMSLAGLWAGNPLDWQLFWTSRLPRLMAIVVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLVSIILLPSASIFVKTGFAITVTLIGAMAFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQMDL
LQNLAGWLQGDFSTILNGQYELIYLSVPVLILIYIFANRFVLAGLGQDFATNLGLNYKQTLFLGLLLVSVITGVVIVTVG
AIPFLGLIVPNLVSLYLGDNIRRTLSHTALLGALLVLLCDVFGRVVIYPYEVSVSLIMGIVGSVIFLWLLLRRYRYAT

Nucleotide


Download         Length: 957 bp        

>NTDB_id=696143 NDN13_RS06355 WP_251117617.1 1280046..1281002(-) (ceuB) [Acinetobacter sp. C32I]
ATGATTAAGCGGCGTTATCTAATTTTATTATTGCTTCCACTGGCATTGATTTCCCTATTTGTCGGTGTAGGCGAGATGAG
TCTTGCCGGTTTGTGGGCAGGTAATCCACTGGACTGGCAATTGTTCTGGACCAGTCGTTTGCCGCGTCTTATGGCAATTG
TTGTAGCAGGTGCGGGCCTGAGCGTCTGCGGTTTGATTATGCAATCCCTCAGTCGCAACCGTTTCGTGTCGCCAACCACC
GCAGGTTTATATGACTGTGCTCGTTTAGGTGTACTGGTTTCGATTATCTTGCTACCGAGTGCTTCAATTTTTGTAAAAAC
AGGTTTTGCCATAACTGTGACACTGATCGGGGCAATGGCCTTTATGAGCATTCTGGCAACCCTCAAGCATCGGGATACCG
TCTTTGTTCCACTGGTGGGGATGATTTTCGGCAGTATTATCTCGGCCTTTACCACCTTTATCGCCTTGCAAATGGATTTA
TTGCAGAACTTGGCGGGGTGGTTGCAAGGTGACTTTTCCACCATTTTAAATGGTCAATATGAGCTGATCTATCTTAGTGT
TCCTGTGTTGATTCTGATTTATATCTTTGCCAATCGTTTTGTCTTGGCAGGCTTGGGACAGGATTTTGCCACCAATCTTG
GACTGAATTATAAACAGACCTTATTTTTGGGCTTGTTACTGGTCTCGGTGATTACAGGTGTGGTGATTGTGACTGTGGGT
GCGATTCCGTTTCTTGGGCTGATCGTACCGAATTTGGTCAGCTTATATCTAGGTGACAATATCCGCCGAACCTTATCACA
TACGGCGCTTCTCGGTGCTTTACTGGTTCTGCTATGTGATGTCTTTGGCAGGGTGGTGATCTATCCCTATGAGGTGTCGG
TGAGTCTGATTATGGGCATCGTTGGTAGTGTGATTTTCCTGTGGTTATTGCTCAGGAGATACCGCTATGCCACATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.201

98.428

0.484