Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   NDN13_RS05980 Genome accession   NZ_CP098480
Coordinates   1210976..1211329 (-) Length   117 a.a.
NCBI ID   WP_045544694.1    Uniprot ID   -
Organism   Acinetobacter sp. C32I     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1205976..1216329
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN13_RS05950 (NDN13_05950) tadA 1206280..1206789 (-) 510 WP_251117565.1 tRNA adenosine(34) deaminase TadA -
  NDN13_RS05955 (NDN13_05955) - 1206795..1207919 (-) 1125 WP_251118175.1 enoyl-CoA hydratase/isomerase family protein -
  NDN13_RS05960 (NDN13_05960) ung 1207916..1208629 (-) 714 WP_251117566.1 uracil-DNA glycosylase -
  NDN13_RS05965 (NDN13_05965) - 1208674..1209270 (-) 597 WP_251117567.1 6-carboxytetrahydropterin synthase -
  NDN13_RS05970 (NDN13_05970) gspK 1209379..1210338 (-) 960 WP_251117568.1 type II secretion system minor pseudopilin GspK -
  NDN13_RS05975 (NDN13_05975) xcpW 1210335..1210979 (-) 645 WP_251117569.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NDN13_RS05980 (NDN13_05980) xcpV 1210976..1211329 (-) 354 WP_045544694.1 type II secretion system protein Machinery gene
  NDN13_RS05985 (NDN13_05985) - 1211538..1212086 (-) 549 WP_251117570.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  NDN13_RS05990 (NDN13_05990) - 1212098..1212706 (-) 609 WP_159415289.1 TetR/AcrR family transcriptional regulator -
  NDN13_RS05995 (NDN13_05995) - 1212748..1213521 (-) 774 WP_251117571.1 TatD family hydrolase -
  NDN13_RS06000 (NDN13_06000) - 1213546..1213890 (-) 345 WP_004806631.1 PilZ domain-containing protein -
  NDN13_RS06005 (NDN13_06005) - 1214228..1214731 (+) 504 WP_251117572.1 hypothetical protein -
  NDN13_RS06010 (NDN13_06010) - 1214786..1215295 (-) 510 WP_032811637.1 lipoprotein -
  NDN13_RS06015 (NDN13_06015) - 1215452..1215757 (-) 306 WP_251117573.1 hypothetical protein -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 13012.97 Da        Isoelectric Point: 9.6252

>NTDB_id=696142 NDN13_RS05980 WP_045544694.1 1210976..1211329(-) (xcpV) [Acinetobacter sp. C32I]
MVALAIFAVAAIALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLDGTQSKQITSQGETWQIDKKAQSTISPK
IQRIELQVSLFNNEQGKVEAGVTNLVFFNYPAKARTQ

Nucleotide


Download         Length: 354 bp        

>NTDB_id=696142 NDN13_RS05980 WP_045544694.1 1210976..1211329(-) (xcpV) [Acinetobacter sp. C32I]
ATGGTGGCCTTGGCGATCTTTGCAGTCGCAGCCATTGCCCTAACTAAAGTTGCGATGCAGTATACGCAGTCTACCTCAAA
TGCGATTTTAAGAACTAAAGCACAATTTGTCGCAATGAATGAAGTGGCGATGATGGAAATCAATCAGGAATGGCTGGATG
GAACACAATCCAAGCAAATCACTTCCCAAGGTGAAACCTGGCAAATTGATAAAAAAGCACAATCGACTATTAGTCCGAAA
ATTCAACGTATCGAGTTACAAGTCAGCTTATTTAATAATGAACAAGGTAAGGTCGAAGCGGGCGTTACTAATCTTGTGTT
CTTTAACTATCCTGCAAAGGCGAGAACACAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

82.609

98.291

0.812