Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   NDN12_RS17150 Genome accession   NZ_CP098479
Coordinates   3750226..3751377 (+) Length   383 a.a.
NCBI ID   WP_251110312.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3745226..3756377
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS17130 (NDN12_17125) - 3746136..3746897 (+) 762 WP_251110310.1 hypothetical protein -
  NDN12_RS17135 (NDN12_17130) - 3746943..3749039 (-) 2097 WP_251110311.1 TonB-dependent copper receptor -
  NDN12_RS17140 (NDN12_17135) - 3749115..3749552 (-) 438 WP_167250913.1 DUF2946 family protein -
  NDN12_RS17145 (NDN12_17140) def 3749572..3750102 (-) 531 WP_004802009.1 peptide deformylase -
  NDN12_RS17150 (NDN12_17145) tsaP 3750226..3751377 (+) 1152 WP_251110312.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NDN12_RS17155 (NDN12_17150) dprA 3751390..3752520 (+) 1131 WP_251110313.1 DNA-processing protein DprA Machinery gene
  NDN12_RS17160 (NDN12_17155) - 3752557..3753126 (+) 570 WP_251110314.1 Sua5/YciO/YrdC/YwlC family protein -
  NDN12_RS17165 (NDN12_17160) - 3753520..3754440 (-) 921 WP_251111564.1 DMT family transporter -
  NDN12_RS17170 (NDN12_17165) - 3754544..3755188 (-) 645 WP_151716539.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41901.06 Da        Isoelectric Point: 9.4198

>NTDB_id=696134 NDN12_RS17150 WP_251110312.1 3750226..3751377(+) (tsaP) [Acinetobacter sp. C26G]
MKKVLNGIHSFHALGLKKQLIAAAICAGLGMSINFAHAASPNVSPPSVKVGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGNTSNLRPQVRVEALNNSVPVIPLAHIQQWLER
TLVIPADAIANTPYILGTADNRVMAGKGQSVYVRGKGLENGQRYGVFREGEPYTALDQNGKKQIIGVELTQVASAVAIRN
ENDITTVELTDSYNGEVRRGDRIMAEQDAMLPTLFYPIDANQVKDGGKIIRVMGSIGTAAKNGVVTVDRGTADGVETGQV
FSIYQDGETVRDPKTKEKVKLPGQYLGSVMIFKSFDRISYAYVLESELPIKLGSDIKPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=696134 NDN12_RS17150 WP_251110312.1 3750226..3751377(+) (tsaP) [Acinetobacter sp. C26G]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTAATTGCCGCTGCAATTTGTGC
GGGATTAGGCATGAGCATTAATTTTGCCCACGCAGCCAGCCCAAATGTCAGTCCACCTTCAGTCAAAGTCGGTGCGCCGC
ATGTCTATGTGGTGAAAAAAGGCGATACGCTTTGGGATATTTCGGGTAAGTTTTTAAGTAAGCCTTGGCGCTGGCCCGAA
ATTTGGGCAAGTAATAAACATGTGAAAAATCCGCACTGGATTTATCCAGGGGATCGCTTACTACTTTGTAGTTTGAACGG
TAAACCTTTAATCGGTAAAGATGAAGGTGATGGCTGTGACGGTATTATTCGTCGCTATACAGGTAATACTTCAAACTTAC
GTCCACAGGTTCGTGTTGAAGCGTTGAACAATAGTGTTCCCGTAATTCCTTTGGCACATATCCAGCAATGGTTAGAACGT
ACCCTCGTTATTCCAGCAGATGCGATTGCCAATACACCTTATATCTTAGGTACAGCAGATAATCGTGTAATGGCAGGTAA
AGGTCAAAGTGTTTATGTACGTGGTAAAGGACTTGAAAACGGTCAACGCTATGGCGTATTCCGTGAAGGTGAACCCTACA
CCGCATTAGATCAAAATGGCAAAAAACAAATCATTGGTGTTGAATTGACCCAAGTCGCTTCAGCCGTTGCGATTCGTAAC
GAAAATGACATCACCACAGTTGAACTGACAGATAGTTATAACGGTGAAGTTCGTCGTGGTGATCGTATCATGGCTGAACA
AGATGCCATGCTACCGACTTTATTCTATCCAATTGATGCCAATCAGGTAAAAGACGGCGGTAAAATTATTCGCGTGATGG
GATCAATCGGTACAGCAGCCAAAAATGGTGTTGTTACTGTAGATCGTGGCACAGCTGACGGTGTTGAAACAGGGCAAGTC
TTTAGCATCTATCAAGATGGTGAAACAGTACGTGATCCAAAAACTAAAGAGAAAGTAAAACTCCCGGGGCAATACCTAGG
TAGTGTTATGATCTTTAAGAGTTTTGACCGTATCAGCTATGCTTATGTACTCGAAAGTGAGTTACCAATTAAGCTTGGCT
CAGATATCAAACCACCTCGTCTCGACGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.573

100

0.708