Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   NDN12_RS16625 Genome accession   NZ_CP098479
Coordinates   3635112..3635438 (-) Length   108 a.a.
NCBI ID   WP_004802206.1    Uniprot ID   R9ALU3
Organism   Acinetobacter sp. C26G     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3630112..3640438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS16605 (NDN12_16600) - 3630384..3631001 (-) 618 WP_251110264.1 FHA domain-containing protein -
  NDN12_RS16610 (NDN12_16605) gspD 3631065..3633314 (-) 2250 WP_167250252.1 type II secretion system secretin GspD -
  NDN12_RS16615 (NDN12_16610) - 3633355..3634191 (-) 837 WP_251110265.1 type II secretion system protein N -
  NDN12_RS16620 (NDN12_16615) gspN 3634191..3634934 (-) 744 WP_167250248.1 type II secretion system protein N -
  NDN12_RS16625 (NDN12_16620) hns 3635112..3635438 (-) 327 WP_004802206.1 H-NS histone family protein Regulator
  NDN12_RS16630 (NDN12_16625) - 3635829..3636266 (-) 438 WP_251110266.1 thioesterase family protein -
  NDN12_RS16635 (NDN12_16630) - 3636275..3637468 (-) 1194 WP_167250246.1 heme biosynthesis protein HemY -
  NDN12_RS16640 (NDN12_16635) - 3637475..3638302 (-) 828 WP_251110267.1 hypothetical protein -
  NDN12_RS16645 (NDN12_16640) - 3638299..3639075 (-) 777 WP_251110268.1 uroporphyrinogen-III synthase -
  NDN12_RS16650 (NDN12_16645) hemC 3639075..3639992 (-) 918 WP_167250582.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12256.95 Da        Isoelectric Point: 5.0355

>NTDB_id=696129 NDN12_RS16625 WP_004802206.1 3635112..3635438(-) (hns) [Acinetobacter sp. C26G]
MKPDISELSVEDLKRLQAEAEALIASKKDQAIEDAYNQIIAIADAIGFSVEELLEVGEQKRKKTTRKAVEPRYRNKSNAE
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=696129 NDN12_RS16625 WP_004802206.1 3635112..3635438(-) (hns) [Acinetobacter sp. C26G]
ATGAAACCAGATATTAGCGAGTTATCTGTAGAAGATTTGAAGCGTTTACAAGCAGAAGCAGAAGCTTTAATTGCAAGTAA
AAAAGATCAAGCTATTGAAGATGCTTATAATCAAATTATTGCAATTGCTGATGCGATTGGCTTTAGTGTTGAAGAATTAT
TGGAAGTGGGCGAACAAAAGCGTAAGAAAACGACGCGTAAAGCAGTAGAGCCACGCTACCGTAATAAGAGCAATGCTGAA
GAAACTTGGACTGGTCGTGGTAAGCAACCACGCTGGTTAGTTGCTGAATTAGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(13-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB R9ALU3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

88.889

100

0.889