Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   NDN12_RS16105 Genome accession   NZ_CP098479
Coordinates   3516305..3518545 (+) Length   746 a.a.
NCBI ID   WP_167250590.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3511305..3523545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS16080 (NDN12_16075) - 3512850..3513188 (-) 339 WP_251110214.1 tRNA-binding protein -
  NDN12_RS16085 (NDN12_16080) - 3513433..3513696 (+) 264 WP_167250406.1 DUF2798 domain-containing protein -
  NDN12_RS16090 (NDN12_16085) - 3513755..3514099 (-) 345 WP_167250404.1 hypothetical protein -
  NDN12_RS16095 (NDN12_16090) gspG 3514360..3514935 (-) 576 WP_285292128.1 type II secretion system major pseudopilin GspG -
  NDN12_RS16100 (NDN12_16095) gspF 3514953..3516158 (-) 1206 WP_167250400.1 type II secretion system inner membrane protein GspF -
  NDN12_RS16105 (NDN12_16100) priA 3516305..3518545 (+) 2241 WP_167250590.1 primosomal protein N' Machinery gene
  NDN12_RS16110 (NDN12_16105) - 3518654..3520474 (+) 1821 WP_251110215.1 cation:proton antiporter -
  NDN12_RS16115 (NDN12_16110) hslO 3520593..3521468 (+) 876 WP_251110216.1 Hsp33 family molecular chaperone HslO -
  NDN12_RS16120 (NDN12_16115) - 3521587..3522195 (+) 609 WP_251110217.1 LysE family translocator -
  NDN12_RS16125 (NDN12_16120) - 3522206..3522652 (-) 447 WP_251110218.1 SRPBCC domain-containing protein -

Sequence

Protein


Download         Length: 746 a.a.        Molecular weight: 84675.66 Da        Isoelectric Point: 8.5587

>NTDB_id=696125 NDN12_RS16105 WP_167250590.1 3516305..3518545(+) (priA) [Acinetobacter sp. C26G]
MNEAYMPTENSNAILYRIRVAIPVYVYDTFDYTVSAEQYAQAQIGARVAISFGRQNLVGIITEKVDPNEVFTGQFKLKAI
TELLDQETILDQQVLTLLTWSAQYYQFPIGEVMQSALPTLLRQGRALDILFHLWKITPHQDPASLLKRSQKQYDAYQVLK
LHPHGATENVLNLSGVETSTLKALEKKGLVECCLEPHDFTPTPVQLAQVPLTPNEDQKKAIQQILKAQHHYQAFLLDGLT
GSGKTEVYLQVMHEVLKQGKQVLVLVPEIGLTPQTVARFKSRFHCDVALLHSGLNDSKRLQAWQHAQTGKASIIIGTRSA
IYTPLPQLGLIILDEEHDLSFKQQEGFRYHTRDVALYRGHLQNCPVILGSATPSIDSYHLVESGKLHLLELNQRAGVAVL
PKMYVVDLKIAKKKHGLSQTLIEQIKHTLERKEQVLIFLNRRGYAPILMCESCGWQANCPHCDAHFTLHSQPYHYLHCHH
CGTINRLPDHCPACQKQSLKTIGAGTAKLEEHLQELFPHNEVIRVDRDSTSRVGSWQKIYDRIQQNKPSILLGTQMLAKG
HHFPHVTLVAILDIDAGLLSVDPRAPERTAQLIVQVAGRAGRGEHKGSVYLQSLRPDHPMLTTLIEHDYRTVAKQMLADR
KIAMLPPYRYAVLVRVESKDRDYSQQFLADIAQQLRAMAGEIVDIWGPIPAPMERKAGRYRAHMVILSSDRAKLHFYLRQ
WWQHVVHLPRQHLLRLSIDVDPQEFS

Nucleotide


Download         Length: 2241 bp        

>NTDB_id=696125 NDN12_RS16105 WP_167250590.1 3516305..3518545(+) (priA) [Acinetobacter sp. C26G]
ATGAATGAAGCCTATATGCCTACCGAAAATTCTAACGCTATTTTGTACCGTATTCGAGTTGCAATACCCGTTTATGTATA
CGACACGTTTGACTATACGGTCAGTGCTGAACAGTACGCCCAAGCTCAAATCGGTGCACGTGTCGCGATTTCTTTTGGTC
GGCAGAATCTTGTTGGGATCATTACAGAGAAAGTTGATCCTAACGAAGTATTTACAGGACAATTCAAACTTAAGGCCATC
ACAGAATTACTCGATCAGGAAACAATTCTAGACCAACAAGTTTTAACTTTGTTGACATGGTCAGCACAATATTATCAATT
CCCGATTGGCGAGGTAATGCAAAGTGCCCTACCTACCTTATTAAGACAAGGGCGTGCCTTAGATATCCTGTTTCATTTAT
GGAAAATCACACCGCATCAAGACCCAGCCTCTTTATTAAAACGATCTCAGAAGCAATATGATGCTTATCAAGTTTTAAAA
CTTCATCCACACGGCGCCACTGAAAATGTTTTAAACCTGAGTGGTGTAGAAACTTCAACCCTGAAAGCACTGGAAAAGAA
GGGCTTGGTTGAGTGCTGTCTGGAACCCCATGATTTCACACCAACGCCTGTGCAACTGGCTCAAGTACCATTAACTCCCA
ATGAGGATCAGAAAAAAGCCATTCAACAGATCCTTAAAGCACAACATCACTATCAAGCATTCTTACTTGATGGTTTGACT
GGTAGTGGTAAAACTGAAGTCTATTTGCAAGTCATGCATGAAGTATTAAAACAAGGCAAGCAGGTCTTGGTGCTGGTCCC
TGAAATTGGTCTAACTCCACAAACGGTGGCTCGTTTTAAGTCACGTTTTCATTGTGATGTTGCCTTACTGCATTCGGGCT
TAAATGACTCGAAACGCCTACAAGCTTGGCAACATGCGCAAACAGGCAAAGCTTCCATTATTATTGGCACACGTTCCGCA
ATTTATACCCCACTTCCTCAGCTTGGTTTAATCATCTTGGATGAGGAACATGATCTTTCCTTTAAGCAGCAAGAAGGTTT
CCGTTATCACACCCGCGATGTCGCTTTATATCGTGGTCATTTGCAAAACTGCCCTGTCATCCTCGGCTCTGCCACACCCA
GCATCGACAGTTATCACTTGGTAGAATCGGGCAAATTACATTTGCTTGAATTGAATCAACGCGCAGGCGTAGCGGTACTA
CCGAAGATGTATGTGGTGGACTTAAAGATTGCAAAAAAGAAGCATGGTCTAAGCCAAACCCTTATTGAACAGATCAAGCA
TACTTTAGAACGTAAAGAACAAGTGCTGATCTTTTTGAATCGACGTGGTTATGCACCGATTCTGATGTGTGAAAGCTGTG
GCTGGCAAGCCAACTGCCCGCATTGTGATGCGCATTTTACCTTGCACTCTCAACCTTATCATTATTTACATTGTCATCAT
TGCGGCACAATCAATCGTCTTCCAGATCATTGCCCCGCATGCCAAAAACAAAGCTTAAAAACGATTGGTGCAGGCACAGC
AAAACTTGAAGAACACTTACAAGAACTATTCCCTCACAATGAAGTTATTCGGGTCGATCGTGACAGTACCAGCCGAGTGG
GTAGCTGGCAGAAAATTTATGATCGTATTCAGCAAAATAAGCCAAGTATTTTGTTGGGTACACAGATGCTGGCCAAAGGA
CATCATTTCCCGCATGTGACACTCGTCGCGATTTTAGATATTGATGCAGGACTACTCAGTGTCGACCCACGTGCGCCTGA
GCGAACCGCACAACTGATTGTACAGGTGGCTGGCCGTGCTGGTCGCGGTGAGCATAAAGGCAGTGTCTATTTACAAAGTC
TGCGCCCTGATCACCCGATGTTAACCACCCTGATTGAGCATGACTATCGTACTGTCGCCAAGCAAATGCTGGCTGACCGC
AAAATCGCGATGTTACCACCCTATCGTTATGCAGTATTGGTTCGGGTCGAATCTAAAGATCGCGACTATAGCCAACAATT
CTTAGCAGATATTGCCCAACAACTGAGAGCAATGGCGGGCGAGATCGTCGATATTTGGGGACCGATTCCCGCACCGATGG
AACGTAAAGCAGGCCGATATCGTGCACATATGGTGATTTTGTCTAGTGATCGAGCAAAACTGCATTTTTATTTACGCCAG
TGGTGGCAACACGTCGTACACTTACCTCGTCAGCATCTACTGAGACTCTCGATTGATGTTGATCCACAAGAGTTTAGTTA
A

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(19-118)

DEAD/DEAH box helicase (DEAD)

(215-376)

Primosomal protein N C-terminal domain (PriA_C)

(647-742)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

81.732

99.062

0.81