Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   NDN12_RS15580 Genome accession   NZ_CP098479
Coordinates   3417269..3418156 (-) Length   295 a.a.
NCBI ID   WP_167250601.1    Uniprot ID   -
Organism   Acinetobacter sp. C26G     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3412269..3423156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN12_RS15560 (NDN12_15555) miaB 3413469..3414920 (+) 1452 WP_167250560.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  NDN12_RS15565 (NDN12_15560) - 3414960..3416036 (+) 1077 WP_004655946.1 PhoH family protein -
  NDN12_RS15570 (NDN12_15565) ybeY 3416111..3416596 (+) 486 WP_251110160.1 rRNA maturation RNase YbeY -
  NDN12_RS15575 (NDN12_15570) - 3416608..3416907 (+) 300 WP_251110161.1 antibiotic biosynthesis monooxygenase -
  NDN12_RS15580 (NDN12_15575) tonB2 3417269..3418156 (-) 888 WP_167250601.1 TonB family protein Machinery gene
  NDN12_RS15585 (NDN12_15580) - 3418398..3419078 (+) 681 WP_251110162.1 hypothetical protein -
  NDN12_RS15590 (NDN12_15585) - 3419273..3419977 (+) 705 WP_251110163.1 DUF3108 domain-containing protein -
  NDN12_RS15595 (NDN12_15590) - 3420066..3420641 (+) 576 WP_004655958.1 xanthine phosphoribosyltransferase -
  NDN12_RS15600 (NDN12_15595) - 3420692..3421516 (-) 825 WP_251110164.1 YwqG family protein -
  NDN12_RS15605 (NDN12_15600) thyA 3421689..3422531 (+) 843 WP_251110165.1 thymidylate synthase -
  NDN12_RS15610 (NDN12_15605) - 3422557..3423066 (+) 510 WP_167250546.1 dihydrofolate reductase -

Sequence

Protein


Download         Length: 295 a.a.        Molecular weight: 33552.25 Da        Isoelectric Point: 8.3424

>NTDB_id=696124 NDN12_RS15580 WP_167250601.1 3417269..3418156(-) (tonB2) [Acinetobacter sp. C26G]
MLNKINFRSELPPYWWQDPIFVGAVALAMLLHGAVLAIQFTMPSPSDTSTKEIAVTVRPSQEKVKDADFLAQADQQGSGE
FREAHRMSSDMPSPMQTDATTGEKELDSLEKIQQKRELKFEEKVLMTVLSWQKQAEQSERKKTLDDLQSQFQAKAAMVAS
LEAQYLQRQQNFSRKQRIKTVDGIQAKQDASAAYLDKFRQKVELYGNRYYPDEAKQQRLAGEVRLMVILNAEGGIRAIRL
IESSGHAILDEAAKASVRRGAPFGPFDAKMKKDISELRIIRTWRFDPVDAEFEVH

Nucleotide


Download         Length: 888 bp        

>NTDB_id=696124 NDN12_RS15580 WP_167250601.1 3417269..3418156(-) (tonB2) [Acinetobacter sp. C26G]
ATGTTGAATAAAATAAATTTTCGTTCAGAACTGCCTCCTTATTGGTGGCAAGACCCTATCTTTGTTGGGGCTGTAGCTTT
AGCGATGTTGCTGCATGGCGCTGTACTGGCTATTCAATTTACCATGCCGTCGCCATCTGATACTTCAACCAAAGAAATAG
CTGTCACTGTTCGACCAAGCCAGGAAAAAGTTAAAGACGCAGATTTTTTGGCACAAGCTGATCAACAAGGTTCTGGTGAG
TTTCGTGAAGCACATCGGATGTCGAGTGATATGCCTTCCCCAATGCAGACAGATGCCACTACAGGTGAAAAAGAGCTAGA
TAGTCTAGAAAAAATTCAGCAAAAACGAGAATTAAAATTCGAAGAAAAGGTTCTAATGACTGTTTTAAGCTGGCAAAAGC
AAGCAGAACAGAGTGAACGGAAAAAGACTCTAGATGACCTACAAAGCCAATTTCAAGCTAAAGCGGCGATGGTCGCAAGC
TTAGAAGCACAATATTTGCAACGCCAACAAAACTTTAGCCGCAAACAACGCATTAAAACGGTCGATGGTATTCAGGCTAA
ACAAGATGCATCAGCTGCTTATCTGGATAAGTTTCGTCAAAAAGTCGAGTTATACGGGAACCGCTATTATCCTGATGAGG
CCAAACAACAACGATTGGCGGGGGAAGTGCGTCTAATGGTGATTTTGAATGCAGAAGGTGGAATTCGAGCAATCCGTTTA
ATTGAAAGTTCTGGGCATGCAATTTTAGATGAAGCAGCTAAAGCATCAGTGCGCCGTGGTGCACCATTTGGACCTTTTGA
TGCCAAGATGAAAAAGGATATTTCTGAGTTACGCATCATTCGTACATGGCGTTTTGATCCTGTCGATGCTGAATTTGAAG
TACACTAA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(207-272)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.949

100

0.769