Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   UNDKW_RS09580 Genome accession   NZ_AP018439
Coordinates   2155344..2156729 (+) Length   461 a.a.
NCBI ID   WP_162058509.1    Uniprot ID   A0A6N4T2P9
Organism   Undibacterium sp. KW1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2150344..2161729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UNDKW_RS09555 (UNDKW_1925) tsaB 2150771..2151481 (+) 711 WP_162058504.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  UNDKW_RS09560 (UNDKW_1926) rimI 2151493..2151957 (+) 465 WP_162058505.1 ribosomal protein S18-alanine N-acetyltransferase -
  UNDKW_RS09565 (UNDKW_1927) - 2151957..2152880 (+) 924 WP_162058506.1 uracil-DNA glycosylase family protein -
  UNDKW_RS09570 (UNDKW_1928) - 2152886..2153875 (+) 990 WP_162058507.1 DUF1853 family protein -
  UNDKW_RS09575 (UNDKW_1929) lplT 2153891..2155153 (-) 1263 WP_162058508.1 lysophospholipid transporter LplT -
  UNDKW_RS09580 (UNDKW_1930) radA 2155344..2156729 (+) 1386 WP_162058509.1 DNA repair protein RadA Machinery gene
  UNDKW_RS09585 (UNDKW_1931) hpnE 2156726..2158096 (-) 1371 WP_162058510.1 hydroxysqualene dehydroxylase HpnE -
  UNDKW_RS09590 (UNDKW_1932) hpnD 2158089..2158922 (-) 834 WP_162058511.1 presqualene diphosphate synthase HpnD -
  UNDKW_RS09595 (UNDKW_1933) - 2159349..2160197 (+) 849 WP_162058512.1 hypothetical protein -
  UNDKW_RS09600 (UNDKW_1934) - 2160313..2161017 (-) 705 WP_197893132.1 M24 family metallopeptidase -
  UNDKW_RS09605 (UNDKW_1935) - 2161053..2161265 (-) 213 WP_197740992.1 hypothetical protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 49086.74 Da        Isoelectric Point: 7.1313

>NTDB_id=69611 UNDKW_RS09580 WP_162058509.1 2155344..2156729(+) (radA) [Undibacterium sp. KW1]
MAKAKTNFTCTECGGIVNKWAGQCPACGQWNTLVETIVESVGNRFSAKPQGLAQSAPVLNLAEIEALDVPRFGTDIDEFD
RVLGGGLVAGGVVLIGGDPGIGKSTLLLQALANLAQKKKVLYVSGEESGAQIALRAKRLSLDAKDLQLQAEIQLEKILNT
LAEHKPQVVVIDSIQTMYSDALSSAPGSVAQVRECAAQLTRVAKTMNITMILVGHVTKEGALAGPRVLEHIVDTVLYFEG
DTHSSFRLVRAIKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHDTQVAGSCVMVTQEGTRPLLVEIQALVDSSHAPN
ARRLSVGLEQNRLAMLLAVLHRHAGVAAFDQDVFINAVGGVKIAEPAADLAVLLAINSSMRNKPLPRGLVVFGEVGLAGE
IRPAPRGQERLREAAKLGFSIAMIPKSNAPKQKIEGLTIIGVDRIEEALSRIRDVDSEIPD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=69611 UNDKW_RS09580 WP_162058509.1 2155344..2156729(+) (radA) [Undibacterium sp. KW1]
ATGGCAAAAGCAAAAACCAATTTTACCTGTACTGAATGTGGTGGTATTGTCAATAAGTGGGCAGGGCAGTGCCCGGCTTG
CGGCCAATGGAATACCCTGGTCGAAACCATCGTCGAATCTGTTGGCAACCGCTTTAGTGCCAAACCCCAGGGGCTGGCGC
AATCTGCACCTGTTTTGAACCTGGCAGAAATTGAGGCGCTGGATGTGCCGCGTTTTGGTACTGATATTGATGAGTTTGAC
CGCGTGCTCGGTGGCGGGTTGGTTGCCGGCGGCGTAGTGCTGATAGGTGGTGACCCTGGCATAGGTAAATCCACTTTGCT
GTTGCAGGCGCTGGCTAATCTGGCTCAAAAGAAAAAGGTCTTGTATGTCAGTGGCGAAGAGTCGGGAGCACAAATCGCCC
TGCGCGCCAAACGCCTGTCGCTGGACGCGAAGGACTTGCAATTACAGGCCGAGATACAACTGGAAAAAATTCTCAATACC
CTGGCTGAGCATAAGCCGCAAGTCGTGGTCATTGATTCCATCCAGACCATGTATTCAGATGCCCTGAGTTCTGCGCCCGG
CTCAGTTGCCCAGGTACGCGAATGTGCCGCCCAGTTGACACGTGTTGCCAAGACCATGAACATCACCATGATACTGGTCG
GCCATGTCACCAAGGAAGGTGCCTTGGCCGGGCCACGTGTGCTTGAGCATATCGTTGATACGGTCTTGTATTTTGAGGGC
GACACCCATTCCAGCTTCCGCCTCGTGCGGGCGATTAAAAACCGTTTTGGTGCAGTCAATGAACTCGGTGTGTTTGCCAT
GACGGAAAAAGGTTTGAAGGGCGTATCCAATCCTTCTGCCTTGTTCCTGTCGCAGCATGATACCCAGGTGGCTGGCTCTT
GCGTCATGGTCACGCAAGAGGGGACGCGGCCCTTGCTGGTAGAGATACAGGCGCTGGTTGACAGTTCACATGCACCCAAT
GCACGCCGTTTGTCCGTTGGTCTTGAGCAAAACCGCCTGGCCATGTTGCTGGCGGTGTTGCACAGGCATGCTGGTGTGGC
GGCTTTTGATCAGGATGTGTTTATCAATGCTGTGGGCGGCGTCAAGATTGCAGAGCCGGCCGCTGATCTGGCCGTGTTGC
TGGCGATCAATTCGTCGATGCGCAATAAACCCCTGCCACGTGGGCTGGTGGTGTTTGGCGAGGTTGGTTTGGCTGGCGAG
ATACGTCCCGCACCGCGTGGTCAGGAGCGCTTGCGTGAAGCGGCCAAGCTGGGTTTTTCGATTGCGATGATCCCAAAATC
AAATGCGCCGAAACAAAAAATCGAAGGCCTGACCATCATCGGGGTCGACAGGATAGAAGAAGCCCTGTCCAGAATCCGCG
ATGTCGATAGCGAAATCCCGGATTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(65-220)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N4T2P9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.231

98.698

0.486
  radA Streptococcus pneumoniae Rx1

47.265

99.132

0.469
  radA Streptococcus pneumoniae R6

47.265

99.132

0.469
  radA Streptococcus pneumoniae TIGR4

47.265

99.132

0.469
  radA Streptococcus pneumoniae D39

47.265

99.132

0.469
  radA Streptococcus mitis SK321

47.368

98.915

0.469
  radA Streptococcus mitis NCTC 12261

47.368

98.915

0.469

Multiple sequence alignment