Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   NDN11_RS17235 Genome accession   NZ_CP098478
Coordinates   3745911..3747062 (+) Length   383 a.a.
NCBI ID   WP_251110312.1    Uniprot ID   -
Organism   Acinetobacter sp. C26M     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3740911..3752062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN11_RS17215 (NDN11_17210) - 3741821..3742582 (+) 762 WP_251110310.1 hypothetical protein -
  NDN11_RS17220 (NDN11_17215) - 3742628..3744724 (-) 2097 WP_251110311.1 TonB-dependent copper receptor -
  NDN11_RS17225 (NDN11_17220) - 3744800..3745237 (-) 438 WP_167250913.1 DUF2946 family protein -
  NDN11_RS17230 (NDN11_17225) def 3745257..3745787 (-) 531 WP_004802009.1 peptide deformylase -
  NDN11_RS17235 (NDN11_17230) tsaP 3745911..3747062 (+) 1152 WP_251110312.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  NDN11_RS17240 (NDN11_17235) dprA 3747075..3748205 (+) 1131 WP_251110313.1 DNA-processing protein DprA Machinery gene
  NDN11_RS17245 (NDN11_17240) - 3748242..3748811 (+) 570 WP_251110314.1 Sua5/YciO/YrdC/YwlC family protein -
  NDN11_RS17250 (NDN11_17245) - 3749205..3750125 (-) 921 WP_251111564.1 DMT family transporter -
  NDN11_RS17255 (NDN11_17250) - 3750229..3750873 (-) 645 WP_151716539.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 383 a.a.        Molecular weight: 41901.06 Da        Isoelectric Point: 9.4198

>NTDB_id=696091 NDN11_RS17235 WP_251110312.1 3745911..3747062(+) (tsaP) [Acinetobacter sp. C26M]
MKKVLNGIHSFHALGLKKQLIAAAICAGLGMSINFAHAASPNVSPPSVKVGAPHVYVVKKGDTLWDISGKFLSKPWRWPE
IWASNKHVKNPHWIYPGDRLLLCSLNGKPLIGKDEGDGCDGIIRRYTGNTSNLRPQVRVEALNNSVPVIPLAHIQQWLER
TLVIPADAIANTPYILGTADNRVMAGKGQSVYVRGKGLENGQRYGVFREGEPYTALDQNGKKQIIGVELTQVASAVAIRN
ENDITTVELTDSYNGEVRRGDRIMAEQDAMLPTLFYPIDANQVKDGGKIIRVMGSIGTAAKNGVVTVDRGTADGVETGQV
FSIYQDGETVRDPKTKEKVKLPGQYLGSVMIFKSFDRISYAYVLESELPIKLGSDIKPPRLDD

Nucleotide


Download         Length: 1152 bp        

>NTDB_id=696091 NDN11_RS17235 WP_251110312.1 3745911..3747062(+) (tsaP) [Acinetobacter sp. C26M]
ATGAAAAAGGTTTTAAACGGCATACACTCATTTCATGCCTTGGGGTTAAAAAAACAACTAATTGCCGCTGCAATTTGTGC
GGGATTAGGCATGAGCATTAATTTTGCCCACGCAGCCAGCCCAAATGTCAGTCCACCTTCAGTCAAAGTCGGTGCGCCGC
ATGTCTATGTGGTGAAAAAAGGCGATACGCTTTGGGATATTTCGGGTAAGTTTTTAAGTAAGCCTTGGCGCTGGCCCGAA
ATTTGGGCAAGTAATAAACATGTGAAAAATCCGCACTGGATTTATCCAGGGGATCGCTTACTACTTTGTAGTTTGAACGG
TAAACCTTTAATCGGTAAAGATGAAGGTGATGGCTGTGACGGTATTATTCGTCGCTATACAGGTAATACTTCAAACTTAC
GTCCACAGGTTCGTGTTGAAGCGTTGAACAATAGTGTTCCCGTAATTCCTTTGGCACATATCCAGCAATGGTTAGAACGT
ACCCTCGTTATTCCAGCAGATGCGATTGCCAATACACCTTATATCTTAGGTACAGCAGATAATCGTGTAATGGCAGGTAA
AGGTCAAAGTGTTTATGTACGTGGTAAAGGACTTGAAAACGGTCAACGCTATGGCGTATTCCGTGAAGGTGAACCCTACA
CCGCATTAGATCAAAATGGCAAAAAACAAATCATTGGTGTTGAATTGACCCAAGTCGCTTCAGCCGTTGCGATTCGTAAC
GAAAATGACATCACCACAGTTGAACTGACAGATAGTTATAACGGTGAAGTTCGTCGTGGTGATCGTATCATGGCTGAACA
AGATGCCATGCTACCGACTTTATTCTATCCAATTGATGCCAATCAGGTAAAAGACGGCGGTAAAATTATTCGCGTGATGG
GATCAATCGGTACAGCAGCCAAAAATGGTGTTGTTACTGTAGATCGTGGCACAGCTGACGGTGTTGAAACAGGGCAAGTC
TTTAGCATCTATCAAGATGGTGAAACAGTACGTGATCCAAAAACTAAAGAGAAAGTAAAACTCCCGGGGCAATACCTAGG
TAGTGTTATGATCTTTAAGAGTTTTGACCGTATCAGCTATGCTTATGTACTCGAAAGTGAGTTACCAATTAAGCTTGGCT
CAGATATCAAACCACCTCGTCTCGACGACTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(56-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

70.573

100

0.708