Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   NDN11_RS16860 Genome accession   NZ_CP098478
Coordinates   3659776..3661341 (+) Length   521 a.a.
NCBI ID   WP_167250202.1    Uniprot ID   -
Organism   Acinetobacter sp. C26M     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 3654776..3666341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN11_RS16835 (NDN11_16830) thrC 3655074..3656213 (+) 1140 WP_004802157.1 threonine synthase -
  NDN11_RS16840 (NDN11_16835) - 3656277..3657062 (-) 786 WP_251110274.1 hypothetical protein -
  NDN11_RS16845 (NDN11_16840) - 3657059..3657697 (-) 639 WP_251110275.1 hypothetical protein -
  NDN11_RS16850 (NDN11_16845) pbpG 3657848..3658912 (-) 1065 WP_167250207.1 D-alanyl-D-alanine endopeptidase PBP7/8 -
  NDN11_RS16855 (NDN11_16850) - 3659123..3659758 (+) 636 WP_167250204.1 response regulator -
  NDN11_RS16860 (NDN11_16855) pilS 3659776..3661341 (+) 1566 WP_167250202.1 ATP-binding protein Regulator
  NDN11_RS16865 (NDN11_16860) pilR 3661364..3662800 (+) 1437 WP_167250200.1 sigma-54 dependent transcriptional regulator Regulator
  NDN11_RS16870 (NDN11_16865) - 3662842..3664017 (-) 1176 WP_167250198.1 S41 family peptidase -
  NDN11_RS16875 (NDN11_16870) gpmI 3664027..3665571 (-) 1545 WP_251110276.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 521 a.a.        Molecular weight: 59323.99 Da        Isoelectric Point: 6.1905

>NTDB_id=696088 NDN11_RS16860 WP_167250202.1 3659776..3661341(+) (pilS) [Acinetobacter sp. C26M]
MLGKIASSVSQTVYRLGVWYSGYRLIISISLLLIYLLTAEQLSSNYVYPFLYFYTLICYITFNIFQLFLLQLVPIQISKQ
LIFIFLIDVICLSLITFSAGGPNLQLSLLYVIIIFSSAILLNAHLSLIITLFAVIMVVYQRFLGDFFAVNNLNHLGNSIF
LAFLFFVVHAIGRIAVQRFKILETLTFHQSIEIHQLQNINRYILEQIEDGYLVLDESNHIVLTNPAANTLLGIHLPVSLE
KTPLIKLQPDLFELVQFSDLEDGEEFSFESQQSPYTINVRVKHLIVPEHALVLLILKDAQKLTQQVQQLKLAALGQLSAS
IAHEIRNPLAAIVQANELFKDSDPHQQEMLSRMINKQAKRIDSIVQDTLAMARNKPTESQEIDLSSFFESLLNEDLTDAK
QQIQIQLTEQTSILFDEKQLRQVLINLIRNALRHNATDAPYIEVEVHEKDGRTCIDVIDFGTGVSKRDISQLFKPFFSTE
IKGTGLGLYLSHTFCEANHAKLTYIERQQGACFRIECSKIH

Nucleotide


Download         Length: 1566 bp        

>NTDB_id=696088 NDN11_RS16860 WP_167250202.1 3659776..3661341(+) (pilS) [Acinetobacter sp. C26M]
ATGTTAGGGAAAATTGCGTCGTCAGTTTCACAAACGGTCTATCGGCTTGGGGTTTGGTATAGCGGCTATCGGCTGATCAT
CTCGATTAGCCTGTTGTTAATTTATTTACTCACCGCCGAACAACTTTCCAGCAACTATGTTTATCCCTTCTTATATTTTT
ACACTTTAATTTGCTATATCACATTCAACATTTTTCAACTCTTTTTACTACAACTTGTTCCAATTCAAATCTCCAAGCAG
CTGATTTTTATCTTTCTGATTGATGTCATTTGTCTGAGTTTAATCACCTTCTCTGCAGGTGGCCCAAATCTGCAACTCAG
CTTACTCTATGTCATTATTATTTTTTCTTCTGCGATTTTATTAAATGCTCACCTATCGCTGATCATTACTTTATTTGCCG
TCATTATGGTGGTTTACCAGCGTTTTTTAGGTGACTTTTTTGCTGTTAATAATTTAAACCACCTCGGCAATAGTATTTTT
CTCGCTTTCTTGTTTTTTGTAGTCCATGCCATTGGTCGCATCGCAGTCCAACGTTTTAAAATTTTAGAAACCTTAACTTT
TCATCAGTCGATTGAAATCCACCAACTGCAAAATATTAACCGCTATATCTTAGAACAGATCGAAGATGGTTATTTGGTAC
TGGATGAAAGCAATCATATTGTCTTAACCAATCCCGCAGCCAATACCTTATTAGGTATCCATTTACCAGTCTCTTTAGAA
AAAACACCGCTGATTAAATTACAACCTGACCTGTTTGAACTTGTCCAATTCAGTGATCTAGAAGATGGCGAAGAATTTAG
TTTTGAATCGCAACAAAGCCCATATACCATCAATGTTCGTGTTAAACATTTGATTGTGCCAGAACATGCCTTGGTCTTAT
TAATCTTAAAAGATGCACAAAAGCTGACTCAACAAGTCCAACAGCTAAAACTTGCCGCACTGGGTCAACTTTCTGCCAGT
ATTGCGCATGAAATTCGCAATCCTTTGGCTGCGATTGTACAAGCCAATGAACTATTTAAAGACAGTGATCCGCATCAACA
AGAAATGCTGTCCCGCATGATCAATAAACAGGCCAAACGGATTGATAGTATCGTGCAAGATACCTTAGCAATGGCACGGA
ATAAACCTACCGAATCACAAGAAATTGATCTAAGCTCTTTTTTTGAAAGTTTACTCAATGAAGATCTAACCGATGCTAAA
CAACAAATTCAAATTCAACTGACAGAACAGACCAGCATTTTATTTGATGAAAAACAATTACGCCAAGTGCTGATTAATTT
AATTCGAAATGCATTACGACATAATGCAACTGACGCTCCTTATATTGAAGTCGAAGTGCACGAAAAAGATGGTCGAACTT
GCATTGATGTCATCGATTTTGGGACGGGTGTCTCAAAACGAGATATTTCTCAACTATTCAAACCATTTTTTAGTACCGAA
ATTAAAGGAACTGGTTTAGGATTGTATTTGTCTCACACATTTTGTGAGGCCAATCATGCAAAGCTCACCTATATAGAGCG
ACAACAAGGAGCATGCTTCAGGATTGAATGCTCTAAAATTCATTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(313-374)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(416-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

64.535

99.04

0.639