Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   NDN11_RS08015 Genome accession   NZ_CP098478
Coordinates   1777892..1778245 (+) Length   117 a.a.
NCBI ID   WP_228284319.1    Uniprot ID   -
Organism   Acinetobacter sp. C26M     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1772892..1783245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN11_RS07985 (NDN11_07980) - 1773786..1774091 (+) 306 WP_167246745.1 hypothetical protein -
  NDN11_RS07990 (NDN11_07985) - 1774240..1774749 (+) 510 WP_005212666.1 hypothetical protein -
  NDN11_RS07995 (NDN11_07990) - 1775320..1775664 (+) 345 WP_167246747.1 PilZ domain-containing protein -
  NDN11_RS08000 (NDN11_07995) - 1775689..1776462 (+) 774 WP_251111328.1 TatD family hydrolase -
  NDN11_RS08005 (NDN11_08000) - 1776503..1777111 (+) 609 WP_167247831.1 TetR/AcrR family transcriptional regulator -
  NDN11_RS08010 (NDN11_08005) - 1777123..1777671 (+) 549 WP_167246751.1 type II secretion system protein -
  NDN11_RS08015 (NDN11_08010) xcpV 1777892..1778245 (+) 354 WP_228284319.1 type II secretion system protein Machinery gene
  NDN11_RS08020 (NDN11_08015) xcpW 1778242..1778976 (+) 735 WP_251111329.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NDN11_RS08025 (NDN11_08020) gspK 1778994..1779968 (+) 975 WP_251111330.1 type II secretion system minor pseudopilin GspK -
  NDN11_RS08030 (NDN11_08025) - 1780077..1780673 (+) 597 WP_251111331.1 6-carboxytetrahydropterin synthase -
  NDN11_RS08035 (NDN11_08030) ung 1780718..1781431 (+) 714 WP_167246761.1 uracil-DNA glycosylase -
  NDN11_RS08040 (NDN11_08035) - 1781428..1782552 (+) 1125 WP_251111517.1 enoyl-CoA hydratase/isomerase family protein -
  NDN11_RS08045 (NDN11_08040) tadA 1782558..1783067 (+) 510 WP_167246765.1 tRNA adenosine(34) deaminase TadA -

Sequence

Protein


Download         Length: 117 a.a.        Molecular weight: 12980.91 Da        Isoelectric Point: 9.6252

>NTDB_id=696074 NDN11_RS08015 WP_228284319.1 1777892..1778245(+) (xcpV) [Acinetobacter sp. C26M]
MVALAIFAVAAIALTKVAMQYTQSTSNAILRTKAQFVGMNEVALMEINQEWLEGTQSKQVTSQGETWQIDKKAQSTISPK
IQRIELQVSLFNNEQGKVEAGVTNLVFFNYPAKARTQ

Nucleotide


Download         Length: 354 bp        

>NTDB_id=696074 NDN11_RS08015 WP_228284319.1 1777892..1778245(+) (xcpV) [Acinetobacter sp. C26M]
ATGGTCGCCCTCGCAATTTTTGCGGTTGCTGCAATCGCGTTGACCAAAGTCGCAATGCAGTACACACAGTCAACTTCGAA
TGCGATCTTACGGACTAAAGCACAATTTGTAGGAATGAATGAAGTTGCGTTGATGGAAATTAATCAGGAATGGTTAGAAG
GAACGCAGTCAAAGCAAGTGACTTCTCAGGGCGAAACCTGGCAGATTGATAAAAAAGCCCAATCTACTATTAGCCCGAAA
ATCCAACGTATCGAGCTGCAAGTCAGCTTATTTAATAATGAACAAGGTAAGGTCGAGGCGGGTGTTACCAATCTTGTGTT
CTTTAACTATCCTGCAAAAGCTAGAACGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

81.739

98.291

0.803