Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NDN11_RS07645 Genome accession   NZ_CP098478
Coordinates   1705356..1706312 (+) Length   318 a.a.
NCBI ID   WP_251111287.1    Uniprot ID   -
Organism   Acinetobacter sp. C26M     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1700356..1711312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NDN11_RS07630 (NDN11_07625) - 1702028..1702249 (+) 222 WP_251111284.1 hypothetical protein -
  NDN11_RS07635 (NDN11_07630) - 1702360..1703817 (-) 1458 WP_251111285.1 DASS family sodium-coupled anion symporter -
  NDN11_RS07640 (NDN11_07635) - 1704076..1705059 (+) 984 WP_251111286.1 ion transporter -
  NDN11_RS07645 (NDN11_07640) ceuB 1705356..1706312 (+) 957 WP_251111287.1 iron chelate uptake ABC transporter family permease subunit Machinery gene
  NDN11_RS07650 (NDN11_07645) - 1706302..1707258 (+) 957 WP_251111288.1 iron chelate uptake ABC transporter family permease subunit -
  NDN11_RS07655 (NDN11_07650) - 1707249..1708013 (+) 765 WP_251111289.1 ATP-binding cassette domain-containing protein -
  NDN11_RS07660 (NDN11_07655) - 1708023..1708976 (+) 954 WP_251111290.1 ABC transporter substrate-binding protein -
  NDN11_RS07665 (NDN11_07660) - 1709072..1709680 (+) 609 WP_251111291.1 DUF2238 domain-containing protein -
  NDN11_RS07670 (NDN11_07665) - 1709702..1710922 (-) 1221 WP_251111292.1 MFS transporter -

Sequence

Protein


Download         Length: 318 a.a.        Molecular weight: 34739.85 Da        Isoelectric Point: 9.8122

>NTDB_id=696073 NDN11_RS07645 WP_251111287.1 1705356..1706312(+) (ceuB) [Acinetobacter sp. C26M]
MIKRRYLILLLLPLAFISLFVGVGEMNLAGLWAGNSHDWQLFWTSRLPRLMAIIVAGAGLSVCGLIMQSLSRNRFVSPTT
AGLYDCARLGVLVSIILLPSASIFVKTGFAIAVTLIGAMAFMSILATLKHRDTVFVPLVGMIFGSIISAFTTFIALQMDL
LQNLAGWLQGDFSTILNGQYELIYLSVPVLILIYIFANRFVLAGLGQDFATNLGLNYKQTLFLGLLLVSVITGVVIVTVG
AIPFLGLIVPNLVSLYLGDNIRRTLSHTALLGALLVLLCDVFGRVVIYPYEVSVSLVMGIVGSVIFLWLLLRRYRYAT

Nucleotide


Download         Length: 957 bp        

>NTDB_id=696073 NDN11_RS07645 WP_251111287.1 1705356..1706312(+) (ceuB) [Acinetobacter sp. C26M]
ATGATTAAGCGGCGTTATCTAATTTTATTATTGCTTCCATTGGCATTTATTTCCTTATTTGTCGGTGTTGGTGAGATGAA
CCTTGCAGGCTTGTGGGCAGGAAATTCACATGACTGGCAGTTGTTTTGGACTAGTCGTTTACCGCGTCTTATGGCAATTA
TTGTGGCAGGTGCGGGGCTGAGTGTCTGTGGCTTGATTATGCAATCACTCAGCCGCAACCGCTTCGTTTCTCCAACTACC
GCAGGTTTATATGACTGTGCCCGTTTAGGTGTATTGGTTTCGATTATCTTGCTGCCAAGTGCTTCTATCTTTGTCAAAAC
AGGTTTTGCGATTGCGGTGACACTGATCGGGGCGATGGCCTTTATGAGCATTCTGGCGACCCTCAAACATCGAGATACGG
TCTTTGTTCCACTGGTGGGGATGATTTTCGGCAGTATTATCTCGGCATTTACCACCTTTATCGCCTTGCAAATGGATCTA
TTGCAGAACTTGGCGGGTTGGTTGCAAGGGGACTTTTCTACCATTTTAAATGGTCAATATGAGCTGATCTATCTCAGTGT
TCCTGTCTTGATTCTGATTTATATCTTTGCCAATCGTTTTGTTTTGGCTGGCTTGGGACAGGATTTTGCCACCAATCTTG
GACTCAATTATAAACAGACCTTATTTCTGGGTTTGCTACTGGTCTCGGTGATTACAGGTGTGGTGATTGTAACCGTTGGC
GCGATTCCTTTTCTTGGGTTGATCGTACCGAATTTGGTCAGCTTATATCTAGGCGACAATATCCGTCGAACCTTATCTCA
TACGGCACTTCTGGGGGCTTTGCTGGTTCTACTCTGTGATGTATTTGGTAGGGTAGTGATCTATCCCTATGAAGTGTCAG
TGAGTCTGGTTATGGGCATCGTTGGTAGTGTGATTTTCCTGTGGTTATTGCTCAGGAGATATCGCTATGCCACATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(11-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

49.84

98.428

0.491