Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   NC852_RS02355 Genome accession   NZ_CP098466
Coordinates   453659..454270 (+) Length   203 a.a.
NCBI ID   WP_263584092.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10720     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 448659..459270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC852_RS02330 (NC852_02315) - 449120..449701 (-) 582 WP_003690895.1 superoxide dismutase -
  NC852_RS02335 (NC852_02320) dnaB 449865..451271 (+) 1407 WP_003699622.1 replicative DNA helicase -
  NC852_RS02340 (NC852_02325) pilH 451425..452090 (+) 666 WP_229931479.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  NC852_RS02345 (NC852_02330) pilV 452122..452733 (+) 612 WP_003699626.1 type IV pilus modification protein PilV Machinery gene
  NC852_RS02350 (NC852_02335) pilJ 452730..453680 (+) 951 WP_003699627.1 PilW family protein Machinery gene
  NC852_RS02355 (NC852_02340) pilK 453659..454270 (+) 612 WP_263584092.1 pilus assembly protein Machinery gene
  NC852_RS02360 (NC852_02345) pilL 454272..454745 (+) 474 WP_172760650.1 PilX family type IV pilin Machinery gene
  NC852_RS02365 (NC852_02350) - 454815..455123 (-) 309 WP_025456177.1 AzlD family protein -
  NC852_RS02370 (NC852_02355) - 455120..455830 (-) 711 Protein_465 AzlC family ABC transporter permease -
  NC852_RS02375 (NC852_02360) dut 455996..456448 (+) 453 WP_003699637.1 dUTP diphosphatase -
  NC852_RS02380 (NC852_02365) dapC 456524..457711 (+) 1188 WP_003699639.1 succinyldiaminopimelate transaminase -
  NC852_RS02385 (NC852_02370) yaaA 457867..458646 (+) 780 WP_003699641.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 22038.94 Da        Isoelectric Point: 7.5813

>NTDB_id=695823 NC852_RS02355 WP_263584092.1 453659..454270(+) (pilK) [Neisseria gonorrhoeae strain 10720]
MRKQNALTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYTA
DSKVTFSENCEKGLCTAVNVRTNNNGNEEAFGNIVVQGKPAVEAVKRSCPAKSGKNSTGLCIDNQGVEYEKGTASVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=695823 NC852_RS02355 WP_263584092.1 453659..454270(+) (pilK) [Neisseria gonorrhoeae strain 10720]
ATGCGCAAACAGAACGCTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTTCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGAGGGAAGGCGAATTTCAGGTTTTGGATTTGGAATATACTGCG
GATAGTAAGGTTACATTTAGCGAAAACTGTGAAAAAGGCCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAA
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCTGCCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGCCTGTGCATTGACAATCAGGGAGTGGAATATGAGAAAGGCACGGCAAGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)

PilX N-terminal (PilX_N)

(17-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

95.074

100

0.951