Detailed information
Bioinformatically predicted
Overview
| Name | recD | Type | Machinery gene |
| Locus tag | NC848_RS04000 | Genome accession | NZ_CP098460 |
| Coordinates | 771432..773177 (+) | Length | 581 a.a. |
| NCBI ID | WP_003693088.1 | Uniprot ID | - |
| Organism | Neisseria gonorrhoeae strain 10814 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 736261..811735 | 771432..773177 | within | 0 |
| IS/Tn | 773864..774865 | 771432..773177 | flank | 687 |
Gene organization within MGE regions
Location: 736261..811735
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NC848_RS03835 (NC848_03805) | - | 736261..737331 (-) | 1071 | WP_003693067.1 | integrase arm-type DNA-binding domain-containing protein | - |
| NC848_RS03840 (NC848_03810) | - | 737540..738319 (-) | 780 | WP_003688701.1 | ferredoxin--NADP reductase | - |
| NC848_RS03845 (NC848_03815) | dinB | 739218..740276 (+) | 1059 | WP_003688698.1 | DNA polymerase IV | - |
| NC848_RS03850 (NC848_03820) | rep | 740346..742361 (-) | 2016 | WP_012503651.1 | DNA helicase Rep | - |
| NC848_RS03855 (NC848_03825) | aroD | 742381..743145 (-) | 765 | WP_003688696.1 | type I 3-dehydroquinate dehydratase | - |
| NC848_RS03860 (NC848_03830) | recA | 743345..744391 (+) | 1047 | WP_003688695.1 | recombinase RecA | Machinery gene |
| NC848_RS03865 (NC848_03835) | - | 745044..745379 (-) | 336 | WP_003688693.1 | YbaB/EbfC family nucleoid-associated protein | - |
| NC848_RS03870 (NC848_03840) | dnaX | 745460..747583 (-) | 2124 | WP_003695312.1 | DNA polymerase III subunit gamma/tau | - |
| NC848_RS03875 (NC848_03845) | mutL | 747678..749642 (-) | 1965 | WP_260240070.1 | DNA mismatch repair endonuclease MutL | - |
| NC848_RS03880 (NC848_03850) | - | 749786..749971 (+) | 186 | WP_003688687.1 | DUF3460 family protein | - |
| NC848_RS03885 (NC848_03855) | - | 749982..750650 (+) | 669 | WP_003688686.1 | class I SAM-dependent methyltransferase | - |
| NC848_RS03890 (NC848_03860) | - | 750650..751363 (+) | 714 | WP_003693072.1 | tol-pal system YbgF family protein | - |
| NC848_RS03895 (NC848_03865) | purE | 751411..751896 (+) | 486 | WP_003688684.1 | 5-(carboxyamino)imidazole ribonucleotide mutase | - |
| NC848_RS03900 (NC848_03870) | - | 752108..752916 (-) | 809 | Protein_760 | transposase | - |
| NC848_RS03905 (NC848_03875) | - | 753290..753655 (+) | 366 | Protein_761 | transposase | - |
| NC848_RS03910 (NC848_03880) | - | 753662..754687 (+) | 1026 | Protein_762 | autotransporter outer membrane beta-barrel domain-containing protein | - |
| NC848_RS03915 (NC848_03885) | - | 754882..755538 (-) | 657 | WP_003693075.1 | response regulator transcription factor | - |
| NC848_RS03920 (NC848_03890) | - | 755535..757304 (-) | 1770 | WP_003699959.1 | histidine kinase | - |
| NC848_RS03925 (NC848_03895) | - | 757511..758125 (+) | 615 | WP_003698471.1 | molybdenum cofactor guanylyltransferase | - |
| NC848_RS03930 (NC848_03900) | - | 758287..758904 (+) | 618 | WP_010358100.1 | riboflavin synthase | - |
| NC848_RS03935 (NC848_03905) | - | 758912..759775 (+) | 864 | WP_003693081.1 | ATP-binding protein | - |
| NC848_RS03940 (NC848_03910) | - | 759788..760222 (-) | 435 | WP_003688677.1 | Spy/CpxP family protein refolding chaperone | - |
| NC848_RS03945 (NC848_03915) | rpe | 760368..761051 (+) | 684 | WP_003688675.1 | ribulose-phosphate 3-epimerase | - |
| NC848_RS03950 (NC848_03920) | ruvB | 761296..762327 (-) | 1032 | WP_003688673.1 | Holliday junction branch migration DNA helicase RuvB | - |
| NC848_RS03955 (NC848_03925) | - | 762409..762717 (-) | 309 | WP_002232489.1 | hypothetical protein | - |
| NC848_RS03960 (NC848_03930) | - | 763136..764368 (-) | 1233 | WP_003691200.1 | multifunctional CCA addition/repair protein | - |
| NC848_RS03965 (NC848_03935) | - | 764447..766075 (-) | 1629 | WP_010951119.1 | ABC-F family ATPase | - |
| NC848_RS03970 (NC848_03940) | - | 766225..766599 (+) | 375 | WP_003688664.1 | arsenate reductase | - |
| NC848_RS03975 (NC848_03945) | - | 766648..768186 (+) | 1539 | WP_003695299.1 | SurA N-terminal domain-containing protein | - |
| NC848_RS03980 (NC848_03950) | recR | 768253..768870 (+) | 618 | WP_003688660.1 | recombination mediator RecR | - |
| NC848_RS03985 (NC848_03955) | - | 768926..769204 (-) | 279 | WP_003688659.1 | hypothetical protein | - |
| NC848_RS03990 (NC848_03960) | - | 769430..770677 (+) | 1248 | WP_003693086.1 | lipoprotein-releasing ABC transporter permease subunit | - |
| NC848_RS03995 (NC848_03965) | lolD | 770670..771365 (+) | 696 | WP_003688655.1 | lipoprotein-releasing ABC transporter ATP-binding protein LolD | - |
| NC848_RS04000 (NC848_03970) | recD | 771432..773177 (+) | 1746 | WP_003693088.1 | exodeoxyribonuclease V subunit alpha | Machinery gene |
| NC848_RS04005 (NC848_03975) | - | 773249..773895 (-) | 647 | Protein_781 | methyltransferase | - |
| NC848_RS04010 (NC848_03980) | - | 773903..774865 (+) | 963 | WP_134994026.1 | transposase | - |
| NC848_RS04015 (NC848_03985) | - | 774994..775454 (-) | 461 | Protein_783 | methyltransferase | - |
| NC848_RS04020 (NC848_03990) | lon | 775706..778168 (+) | 2463 | WP_003691187.1 | endopeptidase La | - |
| NC848_RS04025 (NC848_03995) | - | 778350..778619 (+) | 270 | WP_003688640.1 | HU family DNA-binding protein | - |
| NC848_RS04030 (NC848_04000) | - | 778796..779230 (-) | 435 | WP_003688638.1 | hypothetical protein | - |
| NC848_RS04035 (NC848_04005) | - | 779223..780530 (-) | 1308 | WP_003697095.1 | homoserine dehydrogenase | - |
| NC848_RS04040 (NC848_04010) | - | 780726..781097 (+) | 372 | WP_003688636.1 | Mth938-like domain-containing protein | - |
| NC848_RS04045 (NC848_04015) | - | 781174..783096 (+) | 1923 | WP_003691184.1 | ATP-binding cassette domain-containing protein | - |
| NC848_RS04050 (NC848_04020) | - | 783083..783478 (+) | 396 | WP_010358122.1 | hypothetical protein | - |
| NC848_RS04055 (NC848_04025) | - | 783569..784081 (+) | 513 | WP_003693093.1 | hypothetical protein | - |
| NC848_RS04060 (NC848_04030) | - | 784526..785221 (-) | 696 | WP_020996819.1 | DUF4400 domain-containing protein | - |
| NC848_RS04065 (NC848_04035) | traD | 785211..787253 (-) | 2043 | WP_229930409.1 | type IV conjugative transfer system coupling protein TraD | - |
| NC848_RS04070 (NC848_04040) | mobH | 787250..789802 (-) | 2553 | WP_003693100.1 | MobH family relaxase | - |
| NC848_RS04075 (NC848_04045) | - | 789799..790278 (-) | 480 | WP_229697881.1 | hypothetical protein | - |
| NC848_RS04080 (NC848_04050) | - | 790728..791189 (+) | 462 | WP_003693105.1 | lytic transglycosylase domain-containing protein | - |
| NC848_RS04085 (NC848_04055) | - | 791159..791680 (+) | 522 | WP_003695285.1 | OmpA family protein | - |
| NC848_RS04090 (NC848_04060) | traA | 791736..792032 (+) | 297 | WP_003697092.1 | TraA family conjugative transfer protein | - |
| NC848_RS04095 (NC848_04065) | traL | 792054..792335 (+) | 282 | WP_003693110.1 | type IV conjugative transfer system protein TraL | - |
| NC848_RS04100 (NC848_04070) | - | 792332..792997 (+) | 666 | WP_003704028.1 | conjugal transfer protein TraE | - |
| NC848_RS04105 (NC848_04075) | - | 792999..793733 (+) | 735 | WP_003693114.1 | type-F conjugative transfer system secretin TraK | - |
| NC848_RS04110 (NC848_04080) | - | 793735..795048 (+) | 1314 | WP_003693116.1 | TrbI/VirB10 family protein | - |
| NC848_RS04115 (NC848_04085) | - | 795058..795777 (+) | 720 | WP_003693119.1 | DsbC family protein | - |
| NC848_RS04120 (NC848_04090) | - | 795774..796355 (+) | 582 | WP_017146802.1 | TraV family lipoprotein | - |
| NC848_RS04125 (NC848_04095) | traC | 796365..798941 (+) | 2577 | WP_003693122.1 | type IV secretion system protein TraC | - |
| NC848_RS04130 (NC848_04100) | - | 798969..799517 (+) | 549 | WP_003693124.1 | hypothetical protein | - |
| NC848_RS04135 (NC848_04105) | - | 799517..800062 (+) | 546 | WP_003704029.1 | S26 family signal peptidase | - |
| NC848_RS04140 (NC848_04110) | - | 800071..800727 (+) | 657 | WP_003695268.1 | hypothetical protein | - |
| NC848_RS04145 (NC848_04115) | - | 800889..801842 (+) | 954 | WP_228841907.1 | TraU family protein | - |
| NC848_RS04150 (NC848_04120) | trbC | 801857..802609 (+) | 753 | WP_033909961.1 | type-F conjugative transfer system pilin assembly protein TrbC | - |
| NC848_RS04155 (NC848_04125) | - | 802606..803850 (+) | 1245 | WP_033909962.1 | hypothetical protein | - |
| NC848_RS04160 (NC848_04130) | traN | 803874..805430 (+) | 1557 | WP_260240072.1 | conjugal transfer protein TraN | - |
| NC848_RS04165 (NC848_04135) | - | 805417..805842 (+) | 426 | WP_003693140.1 | hypothetical protein | - |
| NC848_RS04170 (NC848_04140) | - | 805854..806630 (+) | 777 | WP_012503632.1 | thioredoxin family protein | - |
| NC848_RS04175 (NC848_04145) | - | 806802..808313 (+) | 1512 | WP_003693144.1 | conjugal transfer protein TraH | - |
| NC848_RS04180 (NC848_04150) | - | 808320..811229 (+) | 2910 | WP_229930250.1 | conjugal transfer protein TraG N-terminal domain-containing protein | - |
| NC848_RS04185 (NC848_04155) | - | 811292..811735 (+) | 444 | WP_080282892.1 | M23 family metallopeptidase | - |
Sequence
Protein
Download Length: 581 a.a. Molecular weight: 63125.92 Da Isoelectric Point: 5.8825
>NTDB_id=695686 NC848_RS04000 WP_003693088.1 771432..773177(+) (recD) [Neisseria gonorrhoeae strain 10814]
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAVVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
MELQTDEFAQAAARAAIRFLERYAGSGNEVLANCTERLFQALQNGHSFIRLSGDEADALSALAPVVGTSAAPLILEGRRL
FLGRMWQLEYDLAAEIKRLAAAGTSAPDAAGARQNLAKWFQGAGSEGQRDAAALALLQFFMVITGGPGTGKTTTVAKLLA
LICGENENLPHIALAAPTGKAAAHMARALHRAINGFDAPEAVRRHLLKLEGQTVHRLLKLSPPKMQAAFDHIRPLPFDVL
IVDEASMLDTALMLQLLKAVKTGARVILLGDENQLPSVGIGAVLSVLSQKTVLDGETHQRLAGFLPEHGFSVSANPPVLA
QNTAHLSFSHRFGDNSGIGCLARAVVSGDEGAWALFDRFPDELEHSECSPNARVERLYRAHKAYWQAVKDGNIEAAYAGI
SDIVVLAAWRQDAEDFNEAYCSYVRRKMNIPEHLAYFAGEPIMIRQNDYALELFNGDIGLIMEDVGRQGSLAAYFADADG
FKKVAVSCLPEFEPAFAMTVHKSQGSEYREVWLLPPSDAPSDEGDDALSGLSKELLYTAITRAREKFVFFGGKKTFCQAV
NTVKVRQTALDSMLERVFSQE
Nucleotide
Download Length: 1746 bp
>NTDB_id=695686 NC848_RS04000 WP_003693088.1 771432..773177(+) (recD) [Neisseria gonorrhoeae strain 10814]
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGTCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
ATGGAACTGCAGACAGATGAATTTGCCCAAGCGGCGGCAAGGGCGGCAATCCGTTTTTTGGAACGCTATGCGGGTTCGGG
CAACGAAGTGCTTGCAAACTGTACCGAACGCCTGTTTCAGGCATTGCAAAACGGTCATTCGTTTATCCGTTTGAGCGGGG
ACGAGGCTGACGCGCTGTCGGCACTCGCACCCGTGGTCGGAACATCCGCCGCGCCTTTGATTTTGGAAGGCAGAAGGCTG
TTTTTGGGCAGGATGTGGCAGTTGGAATACGATTTGGCTGCCGAAATAAAACGCTTGGCGGCAGCCGGCACGTCCGCCCC
CGACGCGGCAGGCGCGCGGCAAAACCTCGCAAAATGGTTTCAAGGCGCGGGAAGCGAAGGACAGCGCGATGCGGCCGCCT
TGGCACTGTTGCAGTTTTTTATGGTGATTACCGGAGGGCCGGGAACGGGCAAAACGACAACGGTTGCCAAACTGCTGGCA
CTGATTTGCGGTGAAAACGAAAATCTTCCCCATATCGCGCTTGCCGCACCGACGGGCAAAGCGGCGGCACATATGGCGCG
CGCACTGCACCGTGCAATCAACGGTTTTGACGCGCCGGAGGCCGTCCGCCGCCATTTGCTCAAACTGGAAGGGCAAACCG
TCCACCGACTGCTTAAGCTGAGCCCGCCCAAAATGCAGGCGGCGTTCGACCATATCCGTCCGCTGCCGTTCGACGTGCTG
ATTGTCGATGAAGCCTCCATGTTGGATACCGCATTGATGCTGCAACTTTTGAAAGCGGTCAAAACCGGCGCGCGCGTGAT
TCTGCTGGGCGATGAAAACCAGCTCCCGTCCGTCGGAATCGGGGCGGTGCTGTCCGTTTTGTCGCAAAAAACCGTTTTGG
ACGGAGAAACGCACCAAAGGCTGGCCGGTTTCCTTCCGGAACACGGTTTCAGCGTCAGCGCAAATCCGCCCGTGTTGGCG
CAAAACACCGCCCATCTGTCGTTCAGCCACCGCTTCGGCGACAACAGCGGCATCGGCTGCCTTGCCCGTGCCGTCGTATC
GGGCGATGAAGGGGCGTGGGCATTGTTTGACCGGTTTCCGGACGAACTGGAACATTCGGAATGCAGTCCGAACGCTCGGG
TCGAAAGGTTGTACCGGGCGCACAAAGCCTATTGGCAGGCGGTAAAAGACGGCAATATCGAAGCCGCATACGCAGGTATC
TCGGATATCGTGGTTCTGGCAGCTTGGCGGCAGGATGCGGAAGACTTCAACGAAGCCTATTGCAGCTATGTACGCCGCAA
AATGAACATACCGGAACATTTGGCCTATTTCGCCGGAGAGCCGATTATGATCAGACAGAACGACTACGCGCTTGAGCTGT
TCAACGGCGACATCGGACTGATTATGGAAGATGTCGGACGGCAGGGCAGCCTTGCCGCCTATTTTGCCGATGCGGACGGA
TTTAAAAAGGTAGCGGTAAGCTGCCTGCCCGAATTTGAACCCGCATTCGCCATGACCGTCCACAAAAGCCAAGGTTCGGA
ATATCGGGAAGTCTGGCTGCTGCCGCCTTCCGACGCACCTTCGGACGAAGGGGACGATGCATTGTCCGGATTGAGTAAGG
AGCTGTTATATACCGCCATTACCCGCGCCAGGGAAAAATTCGTATTTTTCGGCGGCAAAAAGACATTTTGTCAGGCGGTA
AACACCGTCAAAGTCCGTCAGACGGCGTTGGACAGTATGCTTGAGCGGGTATTTTCACAAGAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recD | Neisseria gonorrhoeae strain FA1090 |
99.484 |
100 |
0.995 |