Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   PCP65_RS26620 Genome accession   NZ_CP115203
Coordinates   5690932..5691297 (-) Length   121 a.a.
NCBI ID   WP_257321145.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F070     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5685932..5696297
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP65_RS26605 (PCP65_26600) pilK 5687276..5688151 (-) 876 WP_003100938.1 type 4 fimbrial methyltransferase PilK -
  PCP65_RS26610 (PCP65_26605) pilJ 5688212..5690260 (-) 2049 WP_003100940.1 chemotaxis chemoreceptor PilJ -
  PCP65_RS26615 (PCP65_26610) - 5690345..5690881 (-) 537 WP_003084590.1 chemotaxis protein CheW -
  PCP65_RS26620 (PCP65_26615) pilH 5690932..5691297 (-) 366 WP_257321145.1 twitching motility response regulator PilH Machinery gene
  PCP65_RS26625 (PCP65_26620) pilG 5691344..5691751 (-) 408 WP_003084583.1 twitching motility response regulator PilG Regulator
  PCP65_RS26630 (PCP65_26625) gshB 5692006..5692959 (+) 954 WP_329029046.1 glutathione synthase -
  PCP65_RS26635 (PCP65_26630) - 5693106..5693999 (+) 894 WP_003162015.1 energy transducer TonB -
  PCP65_RS26640 (PCP65_26635) - 5694048..5694617 (+) 570 WP_003100947.1 YqgE/AlgH family protein -
  PCP65_RS26645 (PCP65_26640) ruvX 5694617..5695051 (+) 435 WP_003084575.1 Holliday junction resolvase RuvX -
  PCP65_RS26650 (PCP65_26645) pyrR 5695163..5695675 (+) 513 WP_003084574.1 bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13301.36 Da        Isoelectric Point: 5.1961

>NTDB_id=695461 PCP65_RS26620 WP_257321145.1 5690932..5691297(-) (pilH) [Pseudomonas aeruginosa strain F070]
MARILIVDDSPTEMYKLTAMLEKHGHQVLKAENGGDGVALARQEKPDVVLMDIVMPGLNGFQATRQLTKDAETSAIPVII
VTTKDQETDKVWGKRQGARDYLTKPVDEETLLKTINAVLVG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=695461 PCP65_RS26620 WP_257321145.1 5690932..5691297(-) (pilH) [Pseudomonas aeruginosa strain F070]
ATGGCTCGTATTTTGATTGTTGATGACTCTCCGACCGAGATGTACAAGCTGACCGCCATGCTGGAAAAGCATGGTCACCA
GGTACTCAAGGCCGAGAACGGCGGCGACGGCGTCGCCCTGGCCCGCCAGGAAAAGCCCGACGTGGTCCTGATGGACATCG
TCATGCCCGGCCTCAACGGCTTCCAGGCGACCCGTCAATTGACCAAGGACGCCGAGACCAGCGCCATCCCGGTGATCATC
GTCACCACCAAGGACCAGGAGACCGACAAGGTCTGGGGCAAGCGCCAGGGCGCGCGCGACTACCTGACCAAGCCGGTGGA
CGAAGAGACCCTGCTGAAAACCATCAATGCGGTGCTGGTGGGCTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

36.975

98.347

0.364