Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NCL52_RS12135 Genome accession   NZ_CP098417
Coordinates   2383928..2384731 (-) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain N2-10     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2378928..2389731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS12110 (NCL52_12110) glpQB 2380065..2380796 (-) 732 WP_086344061.1 glycerophosphodiester phosphodiesterase -
  NCL52_RS12115 (NCL52_12115) yqiI 2380875..2381495 (-) 621 WP_130572549.1 N-acetylmuramoyl-L-alanine amidase -
  NCL52_RS12120 (NCL52_12120) - 2381515..2381811 (-) 297 WP_014480225.1 hypothetical protein -
  NCL52_RS12125 (NCL52_12125) - 2382119..2382271 (+) 153 WP_130572550.1 hypothetical protein -
  NCL52_RS12130 (NCL52_12130) yqiG 2382344..2383462 (+) 1119 WP_017696437.1 NADH-dependent flavin oxidoreductase -
  NCL52_RS12135 (NCL52_12135) spo0A 2383928..2384731 (-) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  NCL52_RS12140 (NCL52_12140) spoIVB 2385007..2386287 (-) 1281 WP_086344063.1 SpoIVB peptidase -
  NCL52_RS12145 (NCL52_12145) recN 2386462..2388192 (-) 1731 WP_038829742.1 DNA repair protein RecN Machinery gene
  NCL52_RS12150 (NCL52_12150) argR 2388229..2388678 (-) 450 WP_003230265.1 arginine repressor ArgR -
  NCL52_RS12155 (NCL52_12155) yqxC 2388776..2389621 (-) 846 WP_003230264.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=695380 NCL52_RS12135 WP_003226427.1 2383928..2384731(-) (spo0A) [Bacillus subtilis strain N2-10]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=695380 NCL52_RS12135 WP_003226427.1 2383928..2384731(-) (spo0A) [Bacillus subtilis strain N2-10]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGCTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGCTGTTCGGCTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAGCATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1