Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   NCL52_RS11120 Genome accession   NZ_CP098417
Coordinates   2203249..2203869 (+) Length   206 a.a.
NCBI ID   WP_024571847.1    Uniprot ID   -
Organism   Bacillus subtilis strain N2-10     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2198249..2208869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS11080 (NCL52_11080) ptsA 2199380..2199886 (-) 507 WP_134981814.1 PTS glucose transporter subunit IIA -
  NCL52_RS11085 (NCL52_11085) ypqA 2200024..2200443 (+) 420 WP_004398640.1 Hsp20/alpha crystallin family protein -
  NCL52_RS11090 (NCL52_11090) sppG 2200464..2200841 (-) 378 WP_014477159.1 YppG family protein -
  NCL52_RS11095 (NCL52_11095) yppF 2201029..2201217 (+) 189 WP_003230690.1 YppF family protein -
  NCL52_RS11100 (NCL52_11100) yppE 2201256..2201627 (-) 372 WP_063335219.1 YppE family protein -
  NCL52_RS11105 (NCL52_11105) yppD 2201673..2201918 (-) 246 WP_015251831.1 YppD family protein -
  NCL52_RS11110 (NCL52_11110) sspM 2202117..2202221 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  NCL52_RS11115 (NCL52_11115) yppC 2202246..2203208 (-) 963 WP_134981815.1 DUF2515 domain-containing protein -
  NCL52_RS11120 (NCL52_11120) recU 2203249..2203869 (+) 621 WP_024571847.1 Holliday junction resolvase RecU Machinery gene
  NCL52_RS11125 (NCL52_11125) ponA 2203891..2206635 (+) 2745 WP_137200828.1 PBP1A family penicillin-binding protein -
  NCL52_RS11130 (NCL52_11130) ypoC 2206711..2207205 (-) 495 WP_009967579.1 YpoC family protein -
  NCL52_RS11135 (NCL52_11135) nth 2207202..2207861 (-) 660 WP_009967580.1 endonuclease III -
  NCL52_RS11140 (NCL52_11140) dnaD 2207880..2208578 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23975.09 Da        Isoelectric Point: 9.6240

>NTDB_id=695379 NCL52_RS11120 WP_024571847.1 2203249..2203869(+) (recU) [Bacillus subtilis strain N2-10]
MIRYPNGKTFQPKHSVSSQNSQKRSPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=695379 NCL52_RS11120 WP_024571847.1 2203249..2203869(+) (recU) [Bacillus subtilis strain N2-10]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGTCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

99.515

100

0.995