Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   NCL52_RS10300 Genome accession   NZ_CP098417
Coordinates   2067496..2068626 (+) Length   376 a.a.
NCBI ID   WP_134982820.1    Uniprot ID   -
Organism   Bacillus subtilis strain N2-10     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2066042..2075636 2067496..2068626 within 0


Gene organization within MGE regions


Location: 2066042..2075636
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS10290 (NCL52_10290) - 2066042..2066416 (+) 375 WP_021481445.1 YoqO family protein -
  NCL52_RS10295 (NCL52_10295) - 2067222..2067362 (+) 141 WP_134982818.1 phage holin -
  NCL52_RS10300 (NCL52_10300) rapC 2067496..2068626 (+) 1131 WP_134982820.1 tetratricopeptide repeat protein Regulator
  NCL52_RS10305 (NCL52_10305) - 2068616..2068759 (+) 144 WP_153801665.1 hypothetical protein -
  NCL52_RS10310 (NCL52_10310) - 2068913..2069113 (-) 201 WP_021481449.1 hypothetical protein -
  NCL52_RS10315 (NCL52_10315) - 2069336..2069505 (-) 170 Protein_1983 hypothetical protein -
  NCL52_RS10320 (NCL52_10320) - 2069503..2069658 (-) 156 Protein_1984 T7SS effector LXG polymorphic toxin -
  NCL52_RS10325 (NCL52_10325) yobM 2069759..2070307 (-) 549 Protein_1985 SMI1/KNR4 family protein -
  NCL52_RS10330 (NCL52_10330) aoxN 2070435..2071871 (+) 1437 WP_134982822.1 flavin monoamine oxidase family protein -
  NCL52_RS10335 (NCL52_10335) yobO 2072297..2074717 (+) 2421 WP_134982824.1 peptidase G2 autoproteolytic cleavage domain-containing protein -
  NCL52_RS10340 (NCL52_10340) csaA 2075304..2075636 (-) 333 WP_085187532.1 chaperone CsaA -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44366.13 Da        Isoelectric Point: 5.7041

>NTDB_id=695378 NCL52_RS10300 WP_134982820.1 2067496..2068626(+) (rapC) [Bacillus subtilis strain N2-10]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYEFDKKDYIKAIKSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKDIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=695378 NCL52_RS10300 WP_134982820.1 2067496..2068626(+) (rapC) [Bacillus subtilis strain N2-10]
ATGGAGCAATTAATTCCGTCATCCACAGTAGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCAGAGATATTAAAAGCAGAGGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAATTTGATAAGAAGGATTATATAAAAGCAATAAAGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCCCTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCTTTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCATTAAAAGATTCGAAAGCTATAA
ACAAGCACAAACTAATTGGTGCATCGTTATATAATTTGGGGAACTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTCTCATTGTACGAAAACGATAAAAGTGACCTTCTCCCTCATACGTTATTTACACTGACACA
AATTTACTTCAAAATGAAGGATATTGAAAAAGCCTTTATTCTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

Tetratricopeptide repeat (TPR_12)

(221-287)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

51.064

100

0.511
  rapF Bacillus subtilis subsp. subtilis str. 168

45.383

100

0.457