Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NCL52_RS08745 Genome accession   NZ_CP098417
Coordinates   1682833..1683726 (+) Length   297 a.a.
NCBI ID   WP_086343834.1    Uniprot ID   -
Organism   Bacillus subtilis strain N2-10     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1677833..1688726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS08725 (NCL52_08725) - 1678503..1680233 (+) 1731 WP_134981736.1 hypothetical protein -
  NCL52_RS08730 (NCL52_08730) ylqH 1680230..1680511 (+) 282 WP_003232001.1 FlhB-like flagellar biosynthesis protein -
  NCL52_RS08735 (NCL52_08735) sucC 1680684..1681841 (+) 1158 WP_014663957.1 ADP-forming succinate--CoA ligase subunit beta -
  NCL52_RS08740 (NCL52_08740) sucD 1681870..1682772 (+) 903 WP_024572248.1 succinate--CoA ligase subunit alpha -
  NCL52_RS08745 (NCL52_08745) dprA 1682833..1683726 (+) 894 WP_086343834.1 DNA-processing protein DprA Machinery gene
  NCL52_RS08750 (NCL52_08750) topA 1683915..1685990 (+) 2076 WP_003245599.1 type I DNA topoisomerase -
  NCL52_RS08755 (NCL52_08755) trmFO 1686066..1687373 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NCL52_RS08760 (NCL52_08760) xerC 1687441..1688355 (+) 915 WP_003231988.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 297 a.a.        Molecular weight: 32874.22 Da        Isoelectric Point: 10.0054

>NTDB_id=695374 NCL52_RS08745 WP_086343834.1 1682833..1683726(+) (dprA) [Bacillus subtilis strain N2-10]
MDQAAACLTICRINQLLSPSLLLKWWKADPSMSLTSPVLQTVTRDQIKAAALKNEIEQLYPKLQRVLAAYREQGINTIPI
SSKQYPFWLKSIYDPPAVLFAKGDMTLLSKGRKIGIVGTRNPTAYGKQVVNHLTKVICRKGWVIVSGLASGIDGMSHAAS
IKAKGRTIGVIAGGFQHIYPRENLQLADHMAKHHILLSEHPPETKPQKWHFPMRNRIISGLSEGVIVVQGKEKSGSLITA
YQALEQGREVFAVPGSLFDPYAGGPIKLIQQGAKAIWSAEDIFEELPERNVQYTEPF

Nucleotide


Download         Length: 894 bp        

>NTDB_id=695374 NCL52_RS08745 WP_086343834.1 1682833..1683726(+) (dprA) [Bacillus subtilis strain N2-10]
TTGGATCAGGCCGCTGCCTGCCTAACGATTTGCAGAATCAATCAATTATTATCCCCATCCCTTCTATTAAAATGGTGGAA
AGCCGATCCGTCTATGTCGCTGACATCACCCGTGTTACAAACGGTTACTCGTGATCAAATAAAAGCAGCTGCATTAAAAA
ACGAAATAGAACAACTTTATCCAAAGCTCCAGCGTGTACTTGCTGCTTATCGTGAGCAAGGCATTAACACCATCCCTATT
TCTTCAAAGCAATATCCTTTCTGGCTTAAAAGCATTTATGATCCCCCCGCCGTACTGTTTGCAAAAGGTGATATGACTCT
TCTTTCGAAAGGGAGAAAAATTGGAATTGTAGGGACAAGAAATCCAACAGCTTATGGGAAACAAGTTGTCAATCATCTTA
CAAAAGTGATCTGTCGTAAAGGTTGGGTGATTGTCAGCGGACTGGCGTCTGGGATAGACGGAATGTCCCATGCTGCAAGT
ATTAAGGCGAAGGGGCGGACAATTGGCGTCATTGCAGGCGGATTTCAACACATTTATCCCCGAGAAAACCTTCAGTTAGC
AGATCACATGGCTAAACACCATATCCTGCTGTCAGAGCACCCACCTGAAACTAAACCCCAAAAATGGCATTTCCCTATGA
GAAACCGTATTATCAGCGGACTAAGTGAAGGCGTTATTGTCGTTCAGGGCAAAGAAAAAAGCGGTTCGCTGATTACTGCC
TATCAAGCATTGGAACAAGGGAGAGAGGTATTTGCCGTACCCGGTTCATTATTTGACCCTTACGCCGGAGGTCCTATAAA
ACTGATCCAGCAGGGGGCTAAAGCCATATGGTCAGCAGAGGATATTTTCGAGGAACTTCCTGAGAGAAACGTTCAATATA
CGGAACCCTTTTGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(71-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

98.653

100

0.987
  dprA Lactococcus lactis subsp. cremoris KW2

41.418

90.236

0.374