Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   NCL52_RS07915 Genome accession   NZ_CP098417
Coordinates   1518123..1518401 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain N2-10     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1513123..1523401
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS07895 (NCL52_07895) panEB 1514311..1515222 (+) 912 WP_137200747.1 ketopantoate reductase family protein -
  NCL52_RS07900 (NCL52_07900) ampS 1515256..1516488 (-) 1233 WP_024572116.1 aminopeptidase -
  NCL52_RS07905 (NCL52_07905) ykpC 1516597..1516731 (-) 135 WP_003238865.1 protein YkpC -
  NCL52_RS07910 (NCL52_07910) mreBH 1516832..1517839 (-) 1008 WP_024572115.1 cell shape-determining protein MreBH -
  NCL52_RS07915 (NCL52_07915) abrB 1518123..1518401 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  NCL52_RS07920 (NCL52_07920) kinC 1518591..1519877 (+) 1287 WP_021479369.1 two-component sensor histidine kinase KinC -
  NCL52_RS07925 (NCL52_07925) ykqA 1519893..1520720 (+) 828 WP_137200749.1 gamma-glutamylcyclotransferase -
  NCL52_RS07930 (NCL52_07930) ktrC 1520783..1521448 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  NCL52_RS07935 (NCL52_07935) ade 1521603..1523336 (+) 1734 WP_134982991.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=695373 NCL52_RS07915 WP_003244728.1 1518123..1518401(+) (abrB) [Bacillus subtilis strain N2-10]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=695373 NCL52_RS07915 WP_003244728.1 1518123..1518401(+) (abrB) [Bacillus subtilis strain N2-10]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576