Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   NCL52_RS07680 Genome accession   NZ_CP098417
Coordinates   1474824..1475288 (-) Length   154 a.a.
NCBI ID   WP_086343783.1    Uniprot ID   -
Organism   Bacillus subtilis strain N2-10     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1469824..1480288
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS07660 (NCL52_07660) kinA 1470291..1472111 (+) 1821 WP_015252197.1 sporulation histidine kinase KinA -
  NCL52_RS07665 (NCL52_07665) dapX 1472121..1473302 (-) 1182 WP_014476653.1 aminotransferase A -
  NCL52_RS07670 (NCL52_07670) - 1473504..1473665 (-) 162 WP_003245246.1 hypothetical protein -
  NCL52_RS07675 (NCL52_07675) cheV 1473869..1474780 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  NCL52_RS07680 (NCL52_07680) kre 1474824..1475288 (-) 465 WP_086343783.1 YkyB family protein Regulator
  NCL52_RS07685 (NCL52_07685) ykuC 1475414..1476706 (-) 1293 WP_014479656.1 MFS transporter -
  NCL52_RS07690 (NCL52_07690) ltdD 1476782..1477276 (-) 495 WP_128738607.1 L,D-transpeptidase family protein -
  NCL52_RS07695 (NCL52_07695) ppeE 1477333..1478190 (-) 858 WP_128737811.1 metallophosphoesterase -
  NCL52_RS07700 (NCL52_07700) fadH 1478333..1479097 (+) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17865.68 Da        Isoelectric Point: 10.3545

>NTDB_id=695371 NCL52_RS07680 WP_086343783.1 1474824..1475288(-) (kre) [Bacillus subtilis strain N2-10]
MDDHAYAKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=695371 NCL52_RS07680 WP_086343783.1 1474824..1475288(-) (kre) [Bacillus subtilis strain N2-10]
ATGGACGACCATGCATATGCGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

99.351

100

0.994