Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   NCL52_RS05755 Genome accession   NZ_CP098417
Coordinates   1116189..1116767 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain N2-10     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1111189..1121767
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS05735 (NCL52_05735) hemAT 1111700..1112998 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  NCL52_RS05740 (NCL52_05740) comW 1113137..1114666 (-) 1530 WP_014476355.1 FAD-dependent oxidoreductase -
  NCL52_RS05745 (NCL52_05745) yhxC 1114778..1115635 (+) 858 WP_128737715.1 SDR family oxidoreductase -
  NCL52_RS05750 (NCL52_05750) yhzC 1115663..1115896 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  NCL52_RS05755 (NCL52_05755) comK 1116189..1116767 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  NCL52_RS05760 (NCL52_05760) yhxD 1116812..1117711 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  NCL52_RS05765 (NCL52_05765) yhjA 1117929..1118198 (+) 270 WP_003224373.1 excalibur calcium-binding domain-containing protein -
  NCL52_RS05770 (NCL52_05770) yhjB 1118242..1119711 (-) 1470 WP_128737717.1 sodium:solute symporter -
  NCL52_RS05775 (NCL52_05775) yhjC 1119708..1119908 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  NCL52_RS05780 (NCL52_05780) - 1120107..1120478 (-) 372 WP_014476361.1 hypothetical protein -
  NCL52_RS05785 (NCL52_05785) yhjE 1120630..1121253 (+) 624 WP_010886465.1 VTT domain-containing protein -
  NCL52_RS05790 (NCL52_05790) lepB 1121255..1121761 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=695359 NCL52_RS05755 WP_003245329.1 1116189..1116767(+) (comK) [Bacillus subtilis strain N2-10]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=695359 NCL52_RS05755 WP_003245329.1 1116189..1116767(+) (comK) [Bacillus subtilis strain N2-10]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTTAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1