Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   MU859_RS07790 Genome accession   NZ_CP098403
Coordinates   1543868..1545664 (+) Length   598 a.a.
NCBI ID   WP_013854784.1    Uniprot ID   A0AAX3UD09
Organism   Lactobacillus kefiranofaciens subsp. kefirgranum strain HL1     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1538868..1550664
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MU859_RS07765 (MU859_07765) - 1539100..1540641 (-) 1542 WP_054640590.1 ABC-F family ATP-binding cassette domain-containing protein -
  MU859_RS07770 (MU859_07770) - 1540648..1541019 (-) 372 WP_025084257.1 hypothetical protein -
  MU859_RS07775 (MU859_07775) - 1541165..1541743 (+) 579 WP_013854781.1 GNAT family protein -
  MU859_RS07780 (MU859_07780) - 1541718..1542407 (-) 690 WP_013854782.1 DUF554 domain-containing protein -
  MU859_RS07785 (MU859_07785) - 1542477..1543706 (-) 1230 WP_054640592.1 LCP family protein -
  MU859_RS07790 (MU859_07790) pepF 1543868..1545664 (+) 1797 WP_013854784.1 oligoendopeptidase F Regulator
  MU859_RS07795 (MU859_07795) - 1545730..1545963 (-) 234 WP_025084256.1 bacteriocin immunity protein -
  MU859_RS07800 (MU859_07800) - 1545938..1546135 (-) 198 WP_013854786.1 helix-turn-helix transcriptional regulator -
  MU859_RS07805 (MU859_07805) - 1546132..1546608 (-) 477 WP_013854787.1 hypothetical protein -
  MU859_RS07810 (MU859_07810) - 1547305..1548405 (+) 1101 WP_250825310.1 vitamin B12 independent methionine synthase -
  MU859_RS07815 (MU859_07815) - 1548468..1548944 (+) 477 WP_095342457.1 S-ribosylhomocysteine lyase -
  MU859_RS07820 (MU859_07820) - 1549074..1549361 (+) 288 WP_013854791.1 type II toxin-antitoxin system Phd/YefM family antitoxin -
  MU859_RS07825 (MU859_07825) - 1549345..1549608 (+) 264 WP_013854792.1 Txe/YoeB family addiction module toxin -

Sequence

Protein


Download         Length: 598 a.a.        Molecular weight: 68208.10 Da        Isoelectric Point: 4.7338

>NTDB_id=695290 MU859_RS07790 WP_013854784.1 1543868..1545664(+) (pepF) [Lactobacillus kefiranofaciens subsp. kefirgranum strain HL1]
MAIPTRDEVPAELKWDLTRIFKTDQDWEQAYDDTKQEVAELDQLKGSLAKSGQDLYEGLTKILAVRRKVENIYVYATMSS
DVDTANSHYLGYVSRVQSLANQFEAVTSFISPEILSIPEDKFKQFLQAEPRLKNYAHYLETITNKRPHTLPAEEEKIIAD
AGDALSTSENTFNVLTNSDMEYGYVQDDDGNMEQLSDGLYSLLIQSQNRDVRKGAFDTLYTTYGQFQNSLASTLSGVVKK
HNYNARVHKYNSAREAALAENGVPTKVYDTLIQEVDSHLDLLHRYVALRKKILGLKDLQMWDMYVPLTGKPSLSYNFKEA
KEVAKKALAPLGEDYLKHVDYIFNNRVIDSVENKNKVTGAYSGGAYDTDPYELLNWEDNIDSLYTLVHETGHSVHSWYTR
HTQPYIYGEYPIFVAEIASTTNENILTEYFLGHITDPKTRAFILNYYLDSFKGTLFRQTQFAVFEQFLHEADAKGEPLTA
DTLDEVYGQINQHYYGDAVEPGGDIALEWSRIPHFYYNFYVYQYATGFAAATALANKVVHGTTAERDAYLGFLKAGSSDY
PTEIMKHAGVDMTKPDYLEDAFKTFEKRLDEFESLIEK

Nucleotide


Download         Length: 1797 bp        

>NTDB_id=695290 MU859_RS07790 WP_013854784.1 1543868..1545664(+) (pepF) [Lactobacillus kefiranofaciens subsp. kefirgranum strain HL1]
ATGGCAATACCAACTAGAGATGAAGTCCCAGCAGAACTTAAATGGGACTTGACGAGAATTTTTAAGACAGATCAAGATTG
GGAGCAGGCTTACGACGACACTAAACAAGAAGTAGCTGAACTTGATCAATTAAAAGGATCATTAGCTAAGTCGGGACAAG
ATTTATACGAAGGCTTAACCAAGATCTTAGCAGTTAGACGCAAGGTAGAAAATATCTACGTTTATGCCACTATGTCTAGT
GATGTCGATACCGCTAATTCACACTACTTAGGCTATGTTAGCCGGGTGCAGAGTTTGGCTAATCAATTCGAAGCCGTAAC
CAGCTTTATTAGTCCAGAAATCTTGAGCATCCCAGAAGACAAGTTCAAGCAATTTTTGCAAGCTGAACCACGCTTAAAGA
ATTACGCTCACTACTTGGAAACGATCACTAATAAGCGGCCCCATACTTTACCAGCTGAGGAAGAAAAAATTATTGCCGAT
GCCGGGGATGCCTTAAGCACTTCAGAGAACACTTTCAATGTTTTAACCAACTCTGACATGGAATACGGCTACGTGCAAGA
TGACGACGGCAATATGGAACAGTTGTCTGATGGGCTTTATTCATTATTGATTCAGTCACAGAACCGTGACGTCAGAAAAG
GTGCCTTTGACACGCTCTATACAACATATGGTCAATTTCAAAACTCCTTAGCTTCTACTCTTTCCGGCGTAGTCAAGAAG
CACAACTATAACGCTCGCGTGCACAAGTATAATTCGGCACGTGAAGCCGCATTAGCTGAAAACGGCGTACCAACCAAGGT
TTACGACACTTTGATTCAAGAAGTTGATTCACACCTTGACCTGCTTCACCGTTATGTTGCGCTGCGTAAGAAAATTTTAG
GCTTGAAAGATTTACAAATGTGGGACATGTACGTGCCGCTAACGGGTAAGCCATCACTGTCCTACAATTTTAAGGAAGCA
AAAGAAGTTGCCAAGAAGGCCTTGGCCCCACTTGGTGAAGACTACTTGAAGCATGTCGATTATATTTTTAATAACCGCGT
GATCGACAGCGTGGAAAATAAAAACAAGGTGACTGGTGCTTACTCTGGTGGTGCTTACGACACTGACCCATATGAACTGC
TCAACTGGGAAGACAATATTGATTCACTTTACACTTTAGTTCACGAAACCGGTCACTCCGTTCACTCTTGGTATACGCGT
CATACCCAGCCTTACATCTATGGCGAGTATCCGATCTTCGTGGCTGAGATTGCTTCAACGACGAACGAAAATATTTTGAC
CGAATATTTCCTGGGGCATATTACCGATCCGAAGACGCGGGCCTTTATTCTGAACTACTACCTTGACTCATTCAAGGGCA
CGCTGTTCCGTCAAACGCAATTCGCTGTTTTTGAACAATTCTTGCATGAAGCTGATGCCAAAGGCGAACCATTAACTGCC
GATACTCTGGATGAGGTTTATGGACAAATCAACCAGCACTACTACGGTGATGCGGTTGAACCCGGCGGCGATATTGCCTT
AGAGTGGTCACGAATTCCGCACTTCTACTACAACTTCTACGTTTACCAATATGCGACGGGCTTTGCGGCTGCGACTGCTT
TGGCTAACAAGGTAGTACATGGAACAACGGCGGAGAGGGATGCCTACCTTGGCTTCCTTAAGGCTGGATCTAGCGATTAC
CCAACAGAGATCATGAAGCACGCTGGCGTGGACATGACTAAGCCGGATTACTTGGAAGATGCATTTAAGACTTTTGAAAA
GCGCTTGGATGAATTTGAGAGTTTGATTGAGAAGTAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(113-181)

Peptidase family M3 (Peptidase_M3)

(203-583)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.59

99.164

0.502