Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NB672_RS17470 Genome accession   NZ_CP098355
Coordinates   3456154..3456750 (-) Length   198 a.a.
NCBI ID   WP_004150836.1    Uniprot ID   A0A0H3GL50
Organism   Klebsiella pneumoniae strain 13001     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 3451154..3461750
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB672_RS17455 (NB672_17455) helD 3451362..3453416 (-) 2055 WP_002898429.1 DNA helicase IV -
  NB672_RS17460 (NB672_17460) - 3453541..3453987 (+) 447 WP_002898425.1 YccF domain-containing protein -
  NB672_RS17465 (NB672_17465) yccS 3454005..3456140 (+) 2136 WP_002898422.1 YccS family putative transporter -
  NB672_RS17470 (NB672_17470) sxy/tfoX 3456154..3456750 (-) 597 WP_004150836.1 TfoX/Sxy family DNA transformation protein Regulator
  NB672_RS17475 (NB672_17475) sulA 3457099..3457608 (+) 510 WP_002898418.1 SOS-induced cell division inhibitor SulA -
  NB672_RS17480 (NB672_17480) ompA 3457961..3459031 (+) 1071 WP_002898408.1 porin OmpA -
  NB672_RS17485 (NB672_17485) matP 3459163..3459615 (-) 453 WP_002898404.1 macrodomain Ter protein MatP -
  NB672_RS17490 (NB672_17490) - 3459801..3461558 (+) 1758 WP_002898401.1 Lon protease family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22576.15 Da        Isoelectric Point: 10.1298

>NTDB_id=695192 NB672_RS17470 WP_004150836.1 3456154..3456750(-) (sxy/tfoX) [Klebsiella pneumoniae strain 13001]
MRKLVCPRLPQFQACVSPLGQLHTRPLFGGYSLAIDDTVFAMVAEGNIYLKACEQSAAYRVEHRNPLLTLRRHGRIVPLK
YYQIDDTLWRDEQQLFRLSLLSWQSAQREKNYRRASGRLKDLPNISFHMELQLIHAGIPDVRTLREVGAQEAWLRLRVNN
ASLSLSVLLALEGAIAGVHAAALPTPRRQELLEWAATR

Nucleotide


Download         Length: 597 bp        

>NTDB_id=695192 NB672_RS17470 WP_004150836.1 3456154..3456750(-) (sxy/tfoX) [Klebsiella pneumoniae strain 13001]
ATGAGAAAACTAGTTTGTCCGCGGCTCCCGCAATTTCAGGCCTGCGTCTCACCGCTGGGTCAACTGCATACTCGTCCGCT
CTTTGGCGGCTACAGCCTGGCTATTGATGATACGGTGTTTGCGATGGTGGCCGAGGGGAACATTTATCTGAAGGCCTGCG
AGCAGAGCGCTGCTTATCGGGTGGAACATCGTAATCCTCTGTTAACGCTGCGCCGACACGGCCGCATAGTGCCGCTGAAG
TATTATCAAATTGACGACACTTTATGGCGCGATGAGCAGCAGCTTTTTCGGCTATCGCTACTGTCGTGGCAGAGTGCGCA
GCGCGAAAAGAACTACCGACGGGCGTCGGGCCGCCTGAAGGATTTACCCAATATCAGCTTTCATATGGAATTGCAGCTGA
TTCACGCGGGCATACCGGACGTTAGGACGTTGCGGGAAGTTGGTGCGCAGGAGGCATGGCTGAGGCTACGCGTAAATAAT
GCTTCTTTATCGCTGAGCGTATTGCTGGCGCTGGAGGGGGCGATTGCCGGGGTACATGCCGCCGCGCTCCCGACGCCACG
GCGTCAGGAGCTTCTCGAATGGGCGGCTACCCGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(16-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3GL50

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

51.269

99.495

0.51