Detailed information NTG0695019

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: PCP52_RS17970
• Genome accession: NZ_CP115199
• Coordinates: 3919908..3920912 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain F074
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3914908..3925912

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PCP52_RS17955 (PCP52_17940)	-	3915391..3916398 (+)	1008	WP_031638797.1	TolB family protein	-
PCP52_RS17960 (PCP52_17945)	mutS	3916524..3919091 (+)	2568	WP_329001403.1	DNA mismatch repair protein MutS	-
PCP52_RS17965 (PCP52_17950)	fdxA	3919158..3919481 (+)	324	WP_003092272.1	ferredoxin FdxA	-
PCP52_RS17970 (PCP52_17955)	rpoS	3919908..3920912 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
PCP52_RS17975 (PCP52_17960)	-	3921017..3921910 (-)	894	WP_049321668.1	peptidoglycan DD-metalloendopeptidase family protein	-
PCP52_RS17980 (PCP52_17965)	-	3921956..3922590 (-)	635	Protein_3542	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
PCP52_RS17985 (PCP52_17970)	surE	3922623..3923372 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
PCP52_RS17990 (PCP52_17975)	truD	3923360..3924427 (-)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
PCP52_RS17995 (PCP52_17980)	ispF	3924424..3924897 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
PCP52_RS18000 (PCP52_17985)	fghA	3924968..3925819 (-)	852	WP_003117489.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=695019 PCP52_RS17970 WP_003113871.1 3919908..3920912(-) (rpoS) [Pseudomonas aeruginosa strain F074]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=695019 PCP52_RS17970 WP_003113871.1 3919908..3920912(-) (rpoS) [Pseudomonas aeruginosa strain F074]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGATCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTGGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCTTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653