Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   PCP52_RS15530 Genome accession   NZ_CP115199
Coordinates   3397020..3397349 (-) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain F074     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3392020..3402349
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCP52_RS15515 (PCP52_15505) uvrB 3393407..3395419 (-) 2013 WP_003104590.1 excinuclease ABC subunit UvrB Machinery gene
  PCP52_RS15520 (PCP52_15510) - 3395607..3396803 (+) 1197 WP_196733875.1 amino acid aminotransferase -
  PCP52_RS15530 (PCP52_15520) comEA/comE1 3397020..3397349 (-) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  PCP52_RS15535 (PCP52_15525) - 3397540..3399537 (-) 1998 WP_171892991.1 polysaccharide biosynthesis protein -
  PCP52_RS15540 (PCP52_15530) - 3399692..3400732 (-) 1041 WP_371032227.1 MraY family glycosyltransferase -
  PCP52_RS15545 (PCP52_15535) - 3400754..3401704 (-) 951 WP_020750837.1 NAD-dependent epimerase/dehydratase family protein -

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=695014 PCP52_RS15530 WP_003091430.1 3397020..3397349(-) (comEA/comE1) [Pseudomonas aeruginosa strain F074]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=695014 PCP52_RS15530 WP_003091430.1 3397020..3397349(-) (comEA/comE1) [Pseudomonas aeruginosa strain F074]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385