Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   NB069_RS07460 Genome accession   NZ_CP098325
Coordinates   1605505..1606131 (+) Length   208 a.a.
NCBI ID   WP_250588772.1    Uniprot ID   -
Organism   Leclercia adecarboxylata strain kcgeb_e1     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1600505..1611131
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB069_RS07440 (NB069_07440) - 1600901..1602661 (-) 1761 WP_250588768.1 Lon protease family protein -
  NB069_RS07445 (NB069_07445) matP 1602848..1603303 (+) 456 WP_250588769.1 macrodomain Ter protein MatP -
  NB069_RS07450 (NB069_07450) ompA 1603370..1604422 (-) 1053 WP_250588770.1 porin OmpA -
  NB069_RS07455 (NB069_07455) sulA 1604778..1605287 (-) 510 WP_250588771.1 SOS-induced cell division inhibitor SulA -
  NB069_RS07460 (NB069_07460) sxy/tfoX 1605505..1606131 (+) 627 WP_250588772.1 TfoX/Sxy family DNA transformation protein Regulator
  NB069_RS07465 (NB069_07465) yccS 1606116..1608251 (-) 2136 WP_250588773.1 YccS family putative transporter -
  NB069_RS07470 (NB069_07470) - 1608270..1608716 (-) 447 WP_250588774.1 YccF domain-containing protein -
  NB069_RS07475 (NB069_07475) helD 1608840..1610894 (+) 2055 WP_250588775.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 24026.73 Da        Isoelectric Point: 8.7202

>NTDB_id=694941 NB069_RS07460 WP_250588772.1 1605505..1606131(+) (sxy/tfoX) [Leclercia adecarboxylata strain kcgeb_e1]
MKKLSYERIYQSAKYLSPLGEVHYRALFGGYTLAVDDTVFAMVSEGELYLRACEESAPYCVKHASSFLSLVKRGRPVLLN
YYRVDEGLWQDREKLLQLSSFALEAARRERCERYKRERLKDLPNLTFQLEILLFEAGITTEEALRTLGAEQCWLKIRALN
KHLSYKVLFALEGAITGLHVAALPEIRRRELVEWYKKLSVENSTHSGS

Nucleotide


Download         Length: 627 bp        

>NTDB_id=694941 NB069_RS07460 WP_250588772.1 1605505..1606131(+) (sxy/tfoX) [Leclercia adecarboxylata strain kcgeb_e1]
ATGAAAAAGCTATCCTACGAACGGATCTATCAATCAGCAAAATATCTTTCACCCCTCGGGGAAGTTCACTATCGCGCCCT
GTTCGGCGGATACACCCTGGCGGTTGATGACACGGTGTTTGCCATGGTGTCGGAGGGGGAGCTGTATCTGCGCGCCTGCG
AAGAGAGTGCGCCTTACTGTGTAAAGCATGCCTCTTCTTTCCTGTCGCTGGTCAAGCGGGGGCGGCCCGTGTTGTTGAAT
TACTATCGCGTCGATGAGGGGCTCTGGCAGGATCGCGAGAAACTGCTGCAACTCTCTTCGTTTGCGCTGGAAGCTGCGCG
GCGGGAACGCTGTGAACGCTACAAGCGCGAGAGGCTAAAGGATTTACCTAATCTCACCTTTCAGCTCGAAATCCTGCTGT
TTGAGGCGGGTATCACCACCGAGGAGGCATTACGCACGCTGGGGGCTGAGCAGTGCTGGCTGAAGATCAGGGCGCTGAAC
AAGCACCTTAGTTACAAGGTGCTGTTTGCACTGGAGGGGGCAATCACCGGGCTACACGTCGCGGCGCTCCCGGAGATCAG
GCGCCGGGAGCTGGTGGAGTGGTACAAAAAGCTATCGGTGGAGAACAGCACTCACTCAGGAAGCTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(15-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

59.296

95.673

0.567