Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NAF01_RS18245 Genome accession   NZ_CP098323
Coordinates   3602612..3604294 (-) Length   560 a.a.
NCBI ID   WP_197247550.1    Uniprot ID   -
Organism   Cytobacillus firmus strain PheN7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3597612..3609294
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF01_RS18225 (NAF01_18225) - 3599362..3599598 (+) 237 WP_048008222.1 DUF2627 domain-containing protein -
  NAF01_RS18230 (NAF01_18230) - 3599616..3599756 (+) 141 WP_082138922.1 YycC family protein -
  NAF01_RS18235 (NAF01_18235) spo0A 3600039..3600827 (-) 789 WP_048008223.1 sporulation transcription factor Spo0A -
  NAF01_RS18240 (NAF01_18240) spoIVB 3601140..3602429 (-) 1290 WP_163143354.1 SpoIVB peptidase -
  NAF01_RS18245 (NAF01_18245) recN 3602612..3604294 (-) 1683 WP_197247550.1 DNA repair protein RecN Machinery gene
  NAF01_RS18250 (NAF01_18250) argR 3604380..3604829 (-) 450 WP_009332889.1 transcriptional regulator ArgR -
  NAF01_RS18255 (NAF01_18255) - 3605001..3605846 (-) 846 WP_250800945.1 TlyA family RNA methyltransferase -
  NAF01_RS18260 (NAF01_18260) dxs 3605850..3607742 (-) 1893 WP_159344688.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NAF01_RS18265 (NAF01_18265) - 3608111..3609004 (-) 894 WP_197247548.1 polyprenyl synthetase family protein -
  NAF01_RS18270 (NAF01_18270) xseB 3609007..3609240 (-) 234 WP_048008230.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 560 a.a.        Molecular weight: 63247.32 Da        Isoelectric Point: 5.2235

>NTDB_id=694912 NAF01_RS18245 WP_197247550.1 3602612..3604294(-) (recN) [Cytobacillus firmus strain PheN7]
MLNEITIRNFAIIEALSVSFEKGLTVLTGETGAGKSIIIDAIHLLAGGRGSAEFVRHGEDKAELEGLFILDDPKHPCYKR
AAEFGIDIEDGMIVLRRDISKTGKSICRVNGKLVTISALREIGSSLIDIHGQHEHQELMNETLHLPLLDQFGGTKISASL
SEYQDIYRLYESTLKKLKNLSENEQQMAHRLDLIQFQLDEIQSAQLKLNEDEDLIEEKRKLSNFERIFDSVQSGYNALQG
EQKGLDWIGLVMGYMNDAAELDPSYKEIAENVANSFYLLEDAASSLRNEMDFMEYDPQRLNEIENRLNEINGLKRKYGKT
VEEVLEYAAKIEEEIETLQNKETHIDKLQKEVTALKKDLMVEGEELSKLRRKSALKLTKLIHKELKELYMEKTVFEVRFF
SDPEVLLKNGIDRAEFYISTNPGEPLKPLSKIASGGELSRIMLALKSIFSKHQGVTSIIFDEVDTGVSGRVAQAIAEKIH
HVSVDSQVLCISHLPQVAAIADTHLFIAKNTNEGRTKTTVKPLNEEEKIKEISRMISGVEITDLTKEHAKELLHMAKQLK

Nucleotide


Download         Length: 1683 bp        

>NTDB_id=694912 NAF01_RS18245 WP_197247550.1 3602612..3604294(-) (recN) [Cytobacillus firmus strain PheN7]
TTGTTAAATGAAATAACGATACGAAATTTTGCTATAATCGAAGCCCTTTCTGTCTCATTTGAAAAGGGCTTAACTGTTTT
AACTGGTGAAACAGGGGCAGGGAAATCCATTATTATTGATGCCATTCACTTGCTGGCTGGAGGCAGGGGATCTGCAGAGT
TTGTCCGGCATGGTGAAGATAAAGCTGAGTTAGAGGGGCTTTTTATCCTGGATGATCCTAAGCACCCTTGCTATAAACGA
GCTGCAGAATTTGGGATAGATATTGAAGATGGAATGATTGTTCTCCGCAGAGATATATCAAAGACAGGAAAAAGCATTTG
CAGAGTGAATGGAAAACTGGTCACTATTTCTGCTTTGAGGGAAATCGGAAGTTCACTTATTGATATACACGGTCAGCACG
AACATCAGGAATTAATGAATGAAACCTTGCATCTTCCTCTTCTCGATCAGTTTGGAGGAACGAAGATTTCTGCTTCCCTT
TCTGAATATCAGGATATCTACAGATTATATGAAAGCACCTTGAAAAAGCTTAAGAATTTAAGCGAGAATGAACAGCAAAT
GGCACACCGGCTTGATTTAATCCAATTTCAGCTTGATGAAATCCAGTCAGCACAGCTGAAATTGAATGAAGATGAGGATC
TGATTGAAGAAAAGAGAAAGCTATCCAATTTTGAACGTATTTTTGACTCAGTTCAGTCTGGCTATAATGCTCTTCAAGGA
GAGCAAAAAGGGCTCGATTGGATTGGGCTGGTTATGGGGTATATGAATGATGCCGCGGAATTGGACCCATCGTATAAAGA
AATAGCGGAAAATGTGGCAAACAGCTTCTATTTGCTTGAAGATGCGGCCAGTTCCCTGCGCAATGAAATGGACTTTATGG
AATATGATCCCCAGAGGCTCAATGAAATCGAAAACAGACTGAATGAAATAAATGGTCTAAAAAGAAAATATGGAAAAACG
GTAGAAGAAGTGCTGGAATACGCAGCAAAAATAGAAGAAGAAATTGAAACCTTGCAAAATAAAGAAACCCATATTGATAA
GCTGCAAAAAGAAGTTACTGCCCTGAAAAAAGACCTTATGGTTGAAGGGGAAGAACTGAGCAAGCTGCGGAGAAAATCTG
CCCTAAAGCTTACGAAGTTAATTCATAAAGAGCTTAAGGAATTATACATGGAAAAAACAGTTTTTGAGGTAAGATTCTTT
TCTGATCCCGAAGTCCTTCTGAAAAATGGCATTGACAGAGCGGAATTCTATATTTCCACCAATCCGGGAGAACCGCTCAA
GCCTCTGTCTAAGATTGCATCGGGAGGGGAATTATCCCGAATCATGCTTGCCTTGAAGAGTATTTTCTCAAAACATCAAG
GTGTTACAAGTATTATCTTCGATGAAGTGGATACAGGCGTGAGCGGAAGAGTGGCACAAGCTATCGCGGAAAAGATTCAT
CATGTTTCCGTGGATTCACAAGTGCTTTGCATCTCTCACCTGCCACAGGTTGCAGCGATTGCAGATACTCATTTATTTAT
TGCTAAAAACACGAATGAAGGACGGACCAAAACTACAGTGAAGCCTCTGAATGAAGAAGAGAAGATAAAAGAAATCAGCC
GTATGATTTCTGGTGTGGAAATTACCGATTTGACGAAAGAGCATGCAAAAGAGCTGCTGCATATGGCTAAACAGCTGAAA
TAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.847

100

0.634