Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   NAF01_RS07290 Genome accession   NZ_CP098323
Coordinates   1393547..1395364 (+) Length   605 a.a.
NCBI ID   WP_250802026.1    Uniprot ID   -
Organism   Cytobacillus firmus strain PheN7     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1388547..1400364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF01_RS07265 (NAF01_07265) - 1388903..1389091 (-) 189 WP_048010953.1 hypothetical protein -
  NAF01_RS07270 (NAF01_07270) - 1389336..1389911 (+) 576 WP_048010952.1 GNAT family N-acetyltransferase -
  NAF01_RS07275 (NAF01_07275) spxA 1390387..1390782 (+) 396 WP_009331204.1 transcriptional regulator SpxA -
  NAF01_RS07280 (NAF01_07280) mecA 1391130..1391795 (+) 666 WP_048010951.1 adaptor protein MecA -
  NAF01_RS07285 (NAF01_07285) - 1392233..1393423 (+) 1191 WP_284709499.1 competence protein CoiA family protein -
  NAF01_RS07290 (NAF01_07290) pepF 1393547..1395364 (+) 1818 WP_250802026.1 oligoendopeptidase F Regulator
  NAF01_RS07295 (NAF01_07295) - 1395882..1396751 (-) 870 WP_250802431.1 ClpXP adapter SpxH family protein -
  NAF01_RS07300 (NAF01_07300) - 1396754..1397158 (-) 405 WP_048010947.1 globin -
  NAF01_RS07305 (NAF01_07305) - 1397406..1398047 (-) 642 WP_197214652.1 lytic transglycosylase domain-containing protein -
  NAF01_RS07310 (NAF01_07310) - 1398080..1398670 (-) 591 WP_250802027.1 CYTH domain-containing protein -
  NAF01_RS07315 (NAF01_07315) - 1398869..1399246 (+) 378 WP_048010944.1 hypothetical protein -
  NAF01_RS07320 (NAF01_07320) - 1399366..1400004 (+) 639 WP_048010943.1 GTP pyrophosphokinase family protein -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 69915.35 Da        Isoelectric Point: 4.9463

>NTDB_id=694901 NAF01_RS07290 WP_250802026.1 1393547..1395364(+) (pepF) [Cytobacillus firmus strain PheN7]
MANETTVKKLPARNEISPEDTWRLEDIFPSDDEWNKEYSEVQKLIPDAGKYQGRLGESAETLYAALQFQDHLLSRLGKLY
TYAHMRYDQDTTNSFYQGMDDKIKNLYSEAASALAYIVPELLAEDEEKIAGYLKEKTELQLYKHSLEEINLQRPHVLSAE
QESLLAQASEVLGASSNTFGMLNNADLEFPSIKDENGEEVEITHGRFIRFLESDEQRVRHDAFKAVYETYGKFRNTFAST
LSGNVKKDNFNAKIRNYDSARHAALSADNIPESVYENLVNTINDNLHLLHRYVKLRKKVLGVKELHMYDLYTPLVKEVKM
EIPYNEAKDLILKGLKPLGEDYLNILKEGFENRWVDVHENKGKRSGAYSSGTYGTNPYILMNWQDNVNNLFTLAHEFGHS
VHSYYTRKYQPYPYGNYSIFVAEVASTCNEALLNDYLLKTIDDDKKRLYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
NNEALTADSLTKEYYELNKKYFGDEDIVIDEEIGLEWSRIPHFYYNYYVYQYATGFSAATALSKQILQEGQPAVDRYIEF
LKSGSSDYPIEVLKKAGVDMTSSKPIEDACKVFEEKLNEMENLLS

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=694901 NAF01_RS07290 WP_250802026.1 1393547..1395364(+) (pepF) [Cytobacillus firmus strain PheN7]
ATGGCTAATGAAACTACTGTAAAGAAACTGCCGGCAAGGAATGAGATTTCACCTGAAGATACGTGGCGTTTGGAGGATAT
TTTCCCTTCTGATGATGAGTGGAACAAGGAATACAGTGAAGTTCAGAAGCTGATTCCGGATGCAGGTAAGTATCAGGGCA
GGCTCGGAGAAAGTGCTGAAACATTATATGCAGCGCTTCAGTTCCAGGATCATTTACTTTCGCGCCTTGGGAAGCTTTAT
ACATATGCCCATATGCGTTATGACCAGGATACAACAAATTCATTTTATCAGGGAATGGATGACAAAATTAAAAATTTGTA
TTCGGAAGCTGCTAGTGCACTTGCTTATATTGTTCCTGAGCTGCTTGCTGAAGATGAAGAGAAGATTGCAGGCTATTTGA
AGGAAAAAACCGAGCTGCAATTATATAAACATTCACTGGAGGAAATTAATCTTCAAAGGCCTCATGTATTATCTGCTGAG
CAGGAATCCCTGCTTGCTCAGGCTTCCGAGGTGCTTGGGGCTTCCAGTAATACATTTGGAATGCTGAATAATGCAGATTT
GGAGTTTCCGTCCATTAAAGATGAAAATGGGGAAGAAGTCGAAATTACTCACGGACGATTCATCCGTTTTCTTGAAAGTG
ACGAGCAGCGTGTCCGGCATGATGCTTTCAAAGCTGTATATGAGACTTATGGGAAGTTTCGTAATACATTTGCCAGCACT
CTAAGCGGAAACGTAAAAAAAGATAACTTCAACGCTAAGATCCGGAATTATGACTCCGCGCGCCATGCTGCCCTTTCTGC
GGACAATATTCCTGAAAGTGTTTATGAAAATCTGGTCAATACCATTAACGATAACCTGCATTTGCTGCATCGCTATGTCA
AACTCCGCAAGAAGGTTCTTGGGGTTAAGGAGCTTCATATGTACGATCTCTACACTCCTTTAGTGAAGGAAGTAAAAATG
GAGATACCTTATAATGAAGCAAAAGATCTGATTTTAAAAGGATTAAAGCCGCTTGGTGAAGACTATTTAAATATTTTAAA
AGAGGGTTTTGAAAATAGATGGGTGGATGTTCATGAGAATAAGGGCAAAAGGAGCGGTGCTTATTCTTCGGGAACATATG
GCACCAACCCTTATATACTAATGAACTGGCAGGATAATGTGAACAACTTATTTACTCTTGCTCATGAATTTGGCCATTCG
GTACACAGCTATTACACAAGAAAATATCAGCCATACCCTTATGGAAACTACTCAATTTTTGTTGCAGAGGTTGCCTCGAC
TTGTAATGAAGCCCTCTTAAACGATTATCTGCTAAAAACAATTGATGATGATAAGAAGCGGCTGTATCTGCTGAATCACT
ATCTTGAAGGCTTTAGAGGCACTGTTTTCCGCCAGACCATGTTTGCAGAATTTGAACATCTTATTCATCAAAAGGCACAA
AACAATGAAGCCTTGACTGCTGATTCATTGACTAAAGAATATTATGAACTTAATAAAAAGTATTTTGGGGATGAAGATAT
CGTAATTGATGAGGAAATCGGCCTGGAATGGTCCAGAATCCCGCATTTCTACTATAATTATTATGTTTATCAATATGCAA
CAGGCTTCAGTGCGGCTACGGCATTAAGCAAGCAAATTCTCCAGGAAGGCCAGCCTGCAGTTGACAGATATATTGAGTTC
CTGAAATCCGGCAGCTCGGATTACCCAATTGAAGTGCTAAAGAAAGCCGGTGTAGATATGACGAGCAGCAAGCCGATTGA
GGATGCCTGCAAAGTATTTGAAGAAAAGCTTAATGAAATGGAAAACTTGCTTTCTTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(211-591)

Oligopeptidase F (Peptidase_M3_N)

(120-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.495

98.182

0.486