Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   NAF01_RS01040 Genome accession   NZ_CP098323
Coordinates   185414..186367 (+) Length   317 a.a.
NCBI ID   WP_095245830.1    Uniprot ID   -
Organism   Cytobacillus firmus strain PheN7     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 180414..191367
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF01_RS24915 - 181930..182055 (+) 126 WP_258752018.1 hypothetical protein -
  NAF01_RS01025 (NAF01_01025) glmS 182152..183954 (+) 1803 WP_048008707.1 glutamine--fructose-6-phosphate transaminase (isomerizing) -
  NAF01_RS01030 (NAF01_01030) - 184163..184606 (+) 444 WP_250801549.1 DUF4275 family protein -
  NAF01_RS01035 (NAF01_01035) - 184751..185140 (+) 390 WP_048008708.1 ribbon-helix-helix protein, CopG family -
  NAF01_RS01040 (NAF01_01040) ceuB 185414..186367 (+) 954 WP_095245830.1 ABC transporter permease Machinery gene
  NAF01_RS01045 (NAF01_01045) - 186357..187310 (+) 954 WP_250801550.1 iron chelate uptake ABC transporter family permease subunit -
  NAF01_RS01050 (NAF01_01050) - 187307..188074 (+) 768 WP_048008711.1 ABC transporter ATP-binding protein -
  NAF01_RS01055 (NAF01_01055) - 188273..189298 (+) 1026 WP_197212801.1 siderophore ABC transporter substrate-binding protein -
  NAF01_RS01060 (NAF01_01060) - 189680..190318 (+) 639 WP_250801551.1 O-methyltransferase -
  NAF01_RS01065 (NAF01_01065) - 190372..191208 (-) 837 WP_248346546.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 34689.75 Da        Isoelectric Point: 9.3878

>NTDB_id=694884 NAF01_RS01040 WP_095245830.1 185414..186367(+) (ceuB) [Cytobacillus firmus strain PheN7]
MRLWMLGIAAIVLSFISLFIGAIDITPKDLLNWESDETHIFLISRIPRLLAIILAGAGMSIAGLIMQSLSRNKFVSPTTA
GTLDAAKLGILISMLFFTNVTYTQQVIFSFAFALAGTFLFMQILDRIKFKDVIFVPLIGIMYGNILSSITTFLGYEADLL
QNLSSWLMGSFTLIIAGRYELLYVSIPAIILAYLYANKFTVAGMGEDFARNLGLSYKLVLNIGLVLVAVISTTVVLTVGV
IPFLGLIVPNIVSLYLGDNLRKTIPHTAVLGIVFLLICDILGRIIIHPYEIPVNVTVAVIGSAIFLTMLLRGRAYAK

Nucleotide


Download         Length: 954 bp        

>NTDB_id=694884 NAF01_RS01040 WP_095245830.1 185414..186367(+) (ceuB) [Cytobacillus firmus strain PheN7]
ATGAGATTATGGATGTTAGGAATTGCAGCCATTGTTCTGTCTTTTATCTCGCTGTTTATCGGTGCAATAGATATAACGCC
TAAGGATCTGCTTAATTGGGAATCAGATGAAACACATATCTTCCTTATCAGCCGCATTCCACGTCTATTGGCGATTATTT
TAGCGGGGGCAGGAATGAGTATTGCCGGTTTAATTATGCAGTCTTTAAGCCGCAATAAGTTTGTATCACCAACAACAGCC
GGAACTTTGGATGCAGCAAAACTGGGTATTTTAATTTCCATGCTGTTTTTTACGAATGTCACTTATACACAGCAGGTTAT
TTTTAGCTTTGCCTTTGCTTTGGCAGGTACATTTCTCTTCATGCAGATTTTAGATCGTATAAAATTTAAAGATGTTATTT
TCGTTCCGTTAATCGGAATTATGTATGGAAATATACTATCTTCGATTACAACGTTTCTTGGATATGAAGCTGATCTGCTG
CAAAATCTATCTTCCTGGCTTATGGGAAGTTTTACTTTGATTATTGCCGGCCGTTATGAGCTTTTATATGTTAGTATTCC
CGCTATTATTCTGGCGTATCTTTATGCGAATAAATTTACGGTTGCCGGAATGGGTGAGGATTTTGCAAGAAATCTTGGCT
TAAGCTATAAGCTGGTACTGAATATTGGCCTGGTCCTTGTTGCGGTTATCTCAACAACGGTGGTTCTTACTGTCGGAGTT
ATTCCATTTTTAGGACTAATCGTTCCCAATATTGTCTCCTTATATTTAGGTGACAACCTGCGCAAAACAATTCCGCATAC
AGCGGTGCTGGGAATTGTCTTCCTATTAATATGTGACATTTTGGGGCGCATCATCATTCATCCTTATGAAATTCCGGTTA
ATGTAACCGTGGCAGTGATAGGCAGTGCTATCTTCTTAACGATGCTGCTAAGGGGGAGAGCATATGCGAAATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

55.482

94.953

0.527