Detailed information    

insolico Bioinformatically predicted

Overview


Name   radA   Type   Machinery gene
Locus tag   NAL90_RS12150 Genome accession   NZ_CP098321
Coordinates   2780004..2781380 (-) Length   458 a.a.
NCBI ID   WP_013698533.1    Uniprot ID   A0AB38TL25
Organism   Burkholderia gladioli strain BK04     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2775004..2786380
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAL90_RS12130 (NAL90_12125) cls 2775398..2776837 (+) 1440 WP_036050854.1 cardiolipin synthase -
  NAL90_RS12135 (NAL90_12130) - 2776869..2777354 (-) 486 WP_013698530.1 glutathione peroxidase -
  NAL90_RS12140 (NAL90_12135) - 2777544..2779469 (+) 1926 WP_186018278.1 ATP-binding cassette domain-containing protein -
  NAL90_RS12145 (NAL90_12140) - 2779609..2779872 (-) 264 WP_013698532.1 DUF2866 domain-containing protein -
  NAL90_RS12150 (NAL90_12145) radA 2780004..2781380 (-) 1377 WP_013698533.1 DNA repair protein RadA Machinery gene
  NAL90_RS12155 (NAL90_12150) alr 2781391..2782461 (-) 1071 WP_013698534.1 alanine racemase -
  NAL90_RS12160 (NAL90_12155) lplT 2782673..2783980 (+) 1308 WP_060003371.1 lysophospholipid transporter LplT -
  NAL90_RS12165 (NAL90_12160) thiD 2784081..2784893 (+) 813 WP_036050843.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NAL90_RS12170 (NAL90_12165) - 2784974..2785927 (-) 954 WP_036050840.1 DUF1853 family protein -

Sequence


Protein


Download         Length: 458 a.a.        Molecular weight: 48728.15 Da        Isoelectric Point: 7.2038

>NTDB_id=694873 NAL90_RS12150 WP_013698533.1 2780004..2781380(-) (radA) [Burkholderia gladioli strain BK04]
MAKQKTVYICTECGGQSLKWQGQCPSCHAWNTLVESAAETPSQHRFQALAKSAPVQRLADIDAADVPRFSTGIGEFDRVL
GGGLVAGGVVLIGGDPGIGKSTLLLQSLAQLASQRRALYISGEESAAQIALRAQRLALLDHGGDAADLKLLAEIQLEKIQ
ATIAAERPDVAVIDSIQTVYSEALTSAPGSVAQVRECAAQLTRIAKQSGTAIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAFKNRFGAVNELGVFAMTERGLRGVSNPSALFLSQHEEVVPGSCVLVTQEGSRPLLVEVQALVDTANV
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKALPKGLIVFGEVGLA
GEIRPSPRGQERLREAAKLGFTIALIPKANAPKQPIEGLTVMAVERIEQAIDRVRGLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=694873 NAL90_RS12150 WP_013698533.1 2780004..2781380(-) (radA) [Burkholderia gladioli strain BK04]
GTGGCGAAACAGAAAACCGTCTATATCTGCACCGAATGCGGCGGCCAGTCGCTGAAATGGCAGGGCCAGTGCCCGTCCTG
CCATGCCTGGAACACGCTGGTCGAATCGGCCGCCGAAACCCCTTCGCAGCACCGCTTCCAGGCGCTCGCCAAGAGCGCGC
CGGTGCAGCGCCTGGCCGATATCGACGCGGCCGACGTGCCGCGCTTTTCCACCGGCATCGGCGAGTTCGACCGCGTGCTC
GGCGGCGGCCTGGTGGCCGGCGGCGTGGTGCTGATCGGCGGCGACCCCGGCATCGGTAAATCCACCCTGTTGCTGCAGTC
GCTGGCCCAGCTGGCCAGCCAGCGCCGCGCGCTCTATATCAGCGGCGAGGAATCGGCCGCCCAGATCGCCCTGCGCGCCC
AGCGCCTGGCCCTGCTCGATCACGGCGGCGACGCCGCCGATCTCAAGCTGCTGGCGGAAATCCAGCTCGAGAAGATCCAG
GCCACGATCGCCGCCGAGCGGCCCGACGTGGCCGTGATCGACTCGATCCAGACCGTCTATTCGGAAGCGCTCACCTCGGC
GCCCGGCTCGGTGGCCCAGGTGCGCGAATGCGCGGCCCAGCTCACGCGCATCGCCAAGCAGTCGGGCACCGCGATCATCA
TGGTTGGCCACGTCACCAAGGAGGGGGCGCTGGCGGGCCCGCGCGTGCTGGAGCACATCGTCGACACGGTGCTGTACTTC
GAGGGCGACACGCATTCTTCCTACCGGCTGGTGCGGGCCTTCAAGAACCGCTTCGGCGCGGTCAACGAGCTCGGGGTGTT
CGCCATGACCGAGCGCGGCCTGCGCGGCGTGTCCAATCCGTCCGCGCTGTTCCTCTCGCAGCACGAGGAGGTGGTGCCGG
GTTCCTGCGTGCTGGTCACGCAGGAGGGCTCGCGGCCGCTGCTGGTGGAGGTGCAGGCGCTGGTCGACACCGCCAACGTG
CCGAATCCGCGGCGCCTGGCGGTGGGCCTGGAGCAGAACCGGCTGGCCATGCTGCTGGCCGTGCTGCATCGCCATGCGGG
CATCGCCTGCTTCGACCAGGACGTGTTCCTGAACGCGGTGGGGGGCGTCAAGATTACCGAGCCGGCCGCCGACCTGGCGG
TGCTGCTGGCGATCCATTCGTCGATGCGTAACAAAGCGTTGCCGAAGGGCCTGATCGTGTTCGGCGAGGTCGGGCTGGCC
GGCGAGATCCGGCCTTCGCCGCGCGGCCAGGAGCGTCTGCGCGAGGCGGCCAAGCTGGGTTTCACGATCGCGCTGATTCC
CAAGGCCAATGCGCCCAAGCAGCCGATCGAGGGGCTCACCGTGATGGCCGTCGAGCGCATCGAGCAGGCCATCGACCGCG
TGCGCGGCCTCGAATGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.707

100

0.493

  radA Streptococcus pneumoniae Rx1

46.32

100

0.467

  radA Streptococcus pneumoniae D39

46.32

100

0.467

  radA Streptococcus pneumoniae R6

46.32

100

0.467

  radA Streptococcus pneumoniae TIGR4

46.32

100

0.467

  radA Streptococcus mitis SK321

46.507

100

0.465

  radA Streptococcus mitis NCTC 12261

46.171

99.782

0.461