Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NB647_RS03055 Genome accession   NZ_CP098252
Coordinates   639797..641272 (-) Length   491 a.a.
NCBI ID   WP_269284098.1    Uniprot ID   -
Organism   Oxalobacter aliiformigenes strain Va3     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 634797..646272
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB647_RS03020 (NB647_03010) - 634876..635394 (-) 519 WP_269265084.1 DUF2059 domain-containing protein -
  NB647_RS03025 (NB647_03015) - 635745..636845 (+) 1101 WP_416143452.1 linear amide C-N hydrolase -
  NB647_RS03035 (NB647_03025) - 637604..638383 (-) 780 WP_269265086.1 tetratricopeptide repeat protein -
  NB647_RS03040 (NB647_03030) - 638959..639099 (+) 141 WP_269284094.1 hypothetical protein -
  NB647_RS03045 (NB647_03035) - 639100..639270 (+) 171 WP_269284096.1 hypothetical protein -
  NB647_RS03050 (NB647_03040) hpf 639391..639738 (-) 348 WP_269265089.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NB647_RS03055 (NB647_03045) rpoN/rpoN1 639797..641272 (-) 1476 WP_269284098.1 RNA polymerase factor sigma-54 Machinery gene
  NB647_RS03060 (NB647_03050) lptB 641287..642030 (-) 744 WP_269284101.1 LPS export ABC transporter ATP-binding protein -
  NB647_RS03065 (NB647_03055) lptA 642027..642581 (-) 555 WP_269284102.1 lipopolysaccharide transport periplasmic protein LptA -
  NB647_RS03070 (NB647_03060) lptC 642598..643203 (-) 606 WP_269284104.1 LPS export ABC transporter periplasmic protein LptC -
  NB647_RS03075 (NB647_03065) - 643200..643727 (-) 528 WP_269265095.1 KdsC family phosphatase -
  NB647_RS03080 (NB647_03070) - 643727..644743 (-) 1017 WP_269284106.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 55808.95 Da        Isoelectric Point: 5.9230

>NTDB_id=694734 NB647_RS03055 WP_269284098.1 639797..641272(-) (rpoN/rpoN1) [Oxalobacter aliiformigenes strain Va3]
MKQKLQTRLAQHFALTPQLQQSIRLLQLSSLELNEEIERALQENPLLERLDDPLANTARFQADGSIIRQPVASGEPAYEE
SSHEPNGGPTDVSTNFTNESGNDEAEHLIWDVPKPADRNPDDERFLPQLEAPPETLKEHLLSQMRLAVRDQRKRALVELI
IDALDSNGYLLETLEEMLAWLPPELAIDRKELEEALCCIQTFDPPGVGARNSAECLAIQIRMMPNIPYIVRKRALNIVEN
HLKLFAQRDFIRLRKTLGCDDEDLLEAREVIQRCNPHPGAAYANDAADIVVPEIVVIKKDGIWHAELNADAMPKIRINRM
YGEILKNTSNKTSLNTRFQEAKWLIRNINQRFDTILRVSEAIIERQQNFFTFGPTSMRPLVLREIADTLGLHESTISRVT
TQKYMLTPLGIFELKYFFGSHIATEGGGEASSTAIREKIKQLIAGEDRKKPYSDNKIAQMLEKEGLVIARRTIAKYRDML
KIPPASLRKSL

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=694734 NB647_RS03055 WP_269284098.1 639797..641272(-) (rpoN/rpoN1) [Oxalobacter aliiformigenes strain Va3]
ATGAAACAGAAACTGCAAACCCGTCTTGCCCAGCATTTCGCTCTGACACCACAACTTCAGCAGTCCATCAGGCTTTTGCA
ACTGTCCAGCCTCGAACTGAACGAGGAAATCGAACGCGCACTGCAAGAAAACCCCCTTCTGGAAAGGCTTGATGACCCGC
TGGCCAACACGGCCCGTTTCCAGGCAGACGGCTCCATCATCCGGCAACCTGTCGCATCAGGAGAACCCGCCTATGAAGAA
AGTTCCCATGAACCAAACGGCGGACCTACCGATGTATCGACAAATTTCACGAATGAATCCGGAAACGATGAAGCAGAGCA
TCTGATCTGGGATGTTCCCAAACCGGCCGACCGGAATCCAGATGACGAACGTTTCCTGCCACAACTGGAAGCCCCTCCCG
AAACACTGAAGGAACATCTGCTATCCCAGATGAGACTGGCTGTTCGTGATCAGCGCAAACGCGCACTGGTCGAACTGATC
ATCGATGCGCTGGATTCCAACGGCTATCTTCTCGAAACTCTGGAAGAAATGCTCGCATGGCTGCCGCCGGAACTGGCTAT
CGACAGGAAAGAACTCGAAGAGGCTCTCTGTTGTATCCAGACCTTCGATCCGCCGGGAGTCGGCGCCAGAAACAGTGCCG
AATGCCTTGCCATCCAGATCAGGATGATGCCGAACATTCCGTACATTGTCCGCAAACGTGCCTTGAATATTGTCGAAAAC
CATCTGAAACTGTTTGCACAACGTGATTTCATCCGGCTGAGAAAAACCCTCGGGTGCGACGATGAAGATCTTCTGGAAGC
CCGGGAAGTCATTCAGCGATGCAATCCTCATCCGGGAGCGGCTTATGCCAACGACGCAGCCGACATTGTCGTACCGGAAA
TCGTGGTTATCAAAAAAGACGGGATCTGGCATGCCGAATTAAATGCTGATGCCATGCCGAAAATCCGCATCAACCGGATG
TATGGAGAAATTCTCAAGAACACATCGAACAAAACCAGTCTCAACACCCGTTTTCAGGAAGCCAAATGGTTGATCCGAAA
CATAAACCAGCGATTCGATACCATTTTGAGGGTTTCGGAAGCTATCATTGAACGGCAACAGAATTTTTTCACTTTCGGTC
CGACTTCCATGCGCCCTCTTGTTTTGCGCGAAATTGCTGATACACTAGGACTACACGAGAGCACCATCTCACGTGTGACA
ACCCAGAAATACATGCTGACACCGCTCGGCATTTTTGAGTTGAAATATTTTTTTGGCAGTCATATCGCTACGGAAGGAGG
AGGAGAAGCGTCTTCAACCGCGATCCGGGAAAAAATAAAACAGCTGATCGCCGGTGAAGACAGGAAAAAACCGTATTCCG
ACAACAAAATCGCACAAATGCTGGAAAAGGAAGGGCTGGTTATTGCAAGAAGAACCATTGCAAAATATCGCGACATGCTG
AAAATCCCGCCGGCTAGTTTGCGAAAAAGTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(333-489)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(130-321)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.089

100

0.525