Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NB646_RS06995 Genome accession   NZ_CP098251
Coordinates   1450864..1452234 (+) Length   456 a.a.
NCBI ID   WP_269315618.1    Uniprot ID   A0A9E9NSF2
Organism   Oxalobacter aliiformigenes strain OxK     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1445864..1457234
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB646_RS06980 (NB646_06920) - 1446861..1448060 (+) 1200 WP_269315617.1 multidrug effflux MFS transporter -
  NB646_RS06985 (NB646_06925) lplT 1448256..1449506 (-) 1251 WP_269263825.1 lysophospholipid transporter LplT -
  NB646_RS06990 (NB646_06930) alr 1449761..1450840 (+) 1080 WP_269284751.1 alanine racemase -
  NB646_RS06995 (NB646_06935) radA 1450864..1452234 (+) 1371 WP_269315618.1 DNA repair protein RadA Machinery gene
  NB646_RS07000 (NB646_06940) - 1452466..1453845 (-) 1380 WP_269263827.1 MATE family efflux transporter -
  NB646_RS07005 (NB646_06945) - 1455461..1455985 (-) 525 WP_269263828.1 cyclophilin-like fold protein -
  NB646_RS07010 (NB646_06950) - 1456165..1456437 (-) 273 WP_269315619.1 hypothetical protein -
  NB646_RS07015 (NB646_06955) - 1456451..1456630 (-) 180 WP_269315620.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48698.30 Da        Isoelectric Point: 7.9945

>NTDB_id=694725 NB646_RS06995 WP_269315618.1 1450864..1452234(+) (radA) [Oxalobacter aliiformigenes strain OxK]
MAKAKIQYTCTECGGVSSKWAGKCPACGQWNTLVETVVEPASSNRFSTNRQGIAQTAPVLSLSDIDAIDVPRFNSGIGEF
DRVLGGGLVPGGVVLIGGDPGIGKSTLLLQTLVNLAHSRNVLYVSGEESGSQVALRAKRLGLLAPNLQLQAEIQLEKILG
TLLEIKPEIAVIDSIQTLYSDALTSAPGSVAQVRECAAQLTRFAKQSGTTVIMVGHVTKEGALAGPRVLEHIVDTVLYFE
GDTHSSFRLIRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHERQIAGSCVMATLEGMRPLLVEIQALVDTSPTP
NARRLSVGLEQNRLAMLLAVMHRHANIAAYDQDVFINAVGGVRISEPAADLAVLMAIHSSLRNKPLPRGLVVFGEIGLAG
EIRPAPRGQDRLREAVKLGFSIALIPKSNAPKQPLEGLTVIGVERIDEAFDKIREL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=694725 NB646_RS06995 WP_269315618.1 1450864..1452234(+) (radA) [Oxalobacter aliiformigenes strain OxK]
ATGGCGAAAGCGAAAATCCAGTATACCTGTACCGAATGCGGTGGCGTCAGCAGCAAATGGGCCGGGAAATGCCCGGCTTG
CGGCCAGTGGAATACGCTGGTCGAAACGGTCGTCGAACCGGCCTCGTCAAACCGCTTTTCCACCAACCGGCAAGGCATCG
CCCAGACGGCGCCCGTGCTGTCACTGTCGGATATCGATGCGATCGATGTTCCGCGTTTCAATTCGGGCATCGGCGAATTC
GACCGTGTGCTGGGGGGCGGACTGGTACCGGGAGGCGTCGTACTGATCGGCGGTGATCCGGGAATCGGAAAATCGACACT
CCTGCTGCAGACACTTGTCAATCTGGCCCATTCCAGAAACGTCCTGTATGTCAGCGGAGAGGAATCCGGTTCGCAGGTGG
CCCTTCGGGCAAAACGGCTCGGCCTGCTGGCACCGAATCTGCAACTGCAGGCGGAAATCCAGCTCGAAAAAATTCTGGGA
ACGCTTCTGGAGATCAAGCCTGAAATCGCCGTTATCGACTCCATCCAGACCCTGTATTCCGATGCCCTGACTTCCGCACC
GGGATCGGTCGCACAGGTCAGGGAATGTGCCGCCCAGCTGACCCGCTTTGCCAAACAGTCAGGCACCACCGTCATCATGG
TAGGGCATGTCACCAAGGAAGGCGCACTGGCAGGCCCGCGCGTACTGGAACATATCGTCGATACCGTCCTGTATTTCGAA
GGCGACACGCATTCCAGTTTCCGCCTGATCCGCGCTTTCAAAAACCGTTTCGGCGCCGTCAACGAACTGGGCGTTTTCGC
CATGACGGAAAAGGGATTGAAAGGCGTATCCAATCCATCCGCCCTGTTTCTCTCGCAGCACGAAAGGCAGATCGCCGGCT
CGTGTGTCATGGCGACCCTGGAAGGCATGCGACCGTTGCTGGTCGAAATCCAGGCGCTGGTCGATACCTCGCCGACGCCC
AATGCACGCCGTCTTTCTGTCGGTCTGGAACAGAACCGGCTGGCCATGCTGCTGGCCGTCATGCACCGGCATGCCAATAT
CGCCGCCTACGATCAGGACGTTTTCATCAATGCGGTCGGAGGTGTCCGGATCAGCGAACCGGCAGCCGATCTGGCCGTTC
TCATGGCAATCCATTCATCGCTTCGCAACAAACCACTCCCGCGTGGACTGGTCGTATTCGGTGAAATCGGACTGGCCGGA
GAAATCCGCCCGGCACCCAGAGGACAGGACCGTTTGCGGGAAGCCGTCAAACTGGGCTTTTCGATTGCACTGATTCCGAA
ATCCAATGCTCCCAAACAACCTCTTGAGGGGCTGACCGTCATCGGTGTGGAACGGATCGACGAAGCGTTCGACAAAATCA
GGGAATTGTAG

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(83-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.802

100

0.491
  radA Streptococcus mitis SK321

46.272

100

0.463
  radA Streptococcus pneumoniae Rx1

45.969

100

0.463
  radA Streptococcus pneumoniae TIGR4

45.969

100

0.463
  radA Streptococcus pneumoniae D39

45.969

100

0.463
  radA Streptococcus pneumoniae R6

45.969

100

0.463
  radA Streptococcus mitis NCTC 12261

46.154

99.781

0.461