Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NB646_RS03460 Genome accession   NZ_CP098251
Coordinates   701028..702503 (-) Length   491 a.a.
NCBI ID   WP_269265091.1    Uniprot ID   A0A9E9LQ98
Organism   Oxalobacter aliiformigenes strain OxK     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 696028..707503
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB646_RS03425 (NB646_03405) - 696105..696623 (-) 519 WP_269265084.1 DUF2059 domain-containing protein -
  NB646_RS03430 (NB646_03410) - 696974..698074 (+) 1101 WP_416143452.1 linear amide C-N hydrolase -
  NB646_RS03440 (NB646_03420) - 698833..699612 (-) 780 WP_269316199.1 tetratricopeptide repeat protein -
  NB646_RS03445 (NB646_03425) - 700188..700328 (+) 141 WP_269284094.1 hypothetical protein -
  NB646_RS03450 (NB646_03430) - 700329..700499 (+) 171 WP_269284096.1 hypothetical protein -
  NB646_RS03455 (NB646_03435) hpf 700622..700969 (-) 348 WP_269265089.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NB646_RS03460 (NB646_03440) rpoN/rpoN1 701028..702503 (-) 1476 WP_269265091.1 RNA polymerase factor sigma-54 Machinery gene
  NB646_RS03465 (NB646_03445) lptB 702518..703261 (-) 744 WP_269265092.1 LPS export ABC transporter ATP-binding protein -
  NB646_RS03470 (NB646_03450) lptA 703258..703812 (-) 555 WP_269316200.1 lipopolysaccharide transport periplasmic protein LptA -
  NB646_RS03475 (NB646_03455) lptC 703829..704434 (-) 606 WP_269316201.1 LPS export ABC transporter periplasmic protein LptC -
  NB646_RS03480 (NB646_03460) - 704431..704958 (-) 528 WP_269316202.1 KdsC family phosphatase -
  NB646_RS03485 (NB646_03465) - 704958..705974 (-) 1017 WP_269316203.1 KpsF/GutQ family sugar-phosphate isomerase -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 55838.98 Da        Isoelectric Point: 5.9230

>NTDB_id=694723 NB646_RS03460 WP_269265091.1 701028..702503(-) (rpoN/rpoN1) [Oxalobacter aliiformigenes strain OxK]
MKQKLQTRLAQHFALTPQLQQSIRLLQLSSLELNEEIERALQENPLLERLDDPLANTTRFQADGSIIRQPVASGEPAYEE
SSHEPNGGPTDVSTNFTNESGNDEAEHLIWDVPKPADRNPDDERFLPQLEAPPETLKEHLLSQMRLAVRDQRKRALVELI
IDALDSNGYLLETLEEMLAWLPPELAIDRKELEEALCCIQTFDPPGVGARNSAECLAIQIRMMPNIPYIVRKRALNIVEN
HLKLFAQRDFIRLRKTLGCDDEDLLEAREVIQRCNPHPGAAYANDAADIVVPEIVVIKKDGIWHAELNADAMPKIRINRM
YGEILKNTSNKTSLNTRFQEAKWLIRNINQRFDTILRVSEAIIERQQNFFTFGPTSMRPLVLREIADTLGLHESTISRVT
TQKYMLTPLGIFELKYFFGSHIATEGGGEASSTAIREKIKQLIAGEDRKKPYSDNKIAQMLEKEGLVIARRTIAKYRDML
KIPPASLRKSL

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=694723 NB646_RS03460 WP_269265091.1 701028..702503(-) (rpoN/rpoN1) [Oxalobacter aliiformigenes strain OxK]
ATGAAACAGAAACTGCAAACCCGTCTTGCCCAGCATTTCGCTCTGACACCACAACTTCAGCAGTCCATCAGGCTTTTGCA
ACTGTCCAGTCTCGAACTGAACGAGGAAATCGAACGCGCACTGCAAGAAAACCCCCTTCTGGAAAGGCTTGATGACCCGC
TGGCCAACACGACCCGTTTCCAGGCAGACGGCTCCATCATCCGGCAACCTGTCGCATCAGGAGAACCCGCCTATGAAGAA
AGTTCCCATGAACCAAACGGCGGACCTACCGATGTATCGACAAATTTCACGAATGAATCCGGAAACGATGAAGCAGAGCA
TCTGATCTGGGATGTTCCCAAACCGGCCGACCGGAATCCAGATGACGAACGTTTCCTGCCACAACTGGAAGCCCCTCCCG
AAACATTGAAGGAACATCTGCTATCCCAGATGAGACTGGCTGTTCGTGATCAGCGCAAACGCGCACTGGTCGAACTAATC
ATCGATGCGCTGGATTCCAACGGCTATCTTCTCGAAACTCTGGAAGAAATGCTCGCATGGCTGCCGCCGGAACTGGCTAT
CGACAGGAAAGAACTCGAAGAGGCTCTCTGTTGTATCCAGACCTTCGATCCGCCGGGAGTCGGCGCCAGAAACAGTGCCG
AATGCCTTGCCATCCAGATCAGGATGATGCCGAACATTCCGTACATTGTCCGCAAACGTGCCTTGAATATTGTCGAAAAC
CATCTGAAACTGTTTGCACAACGTGATTTCATCCGGCTGAGAAAAACCCTCGGGTGCGACGATGAAGATCTTCTGGAAGC
CCGGGAAGTCATTCAGCGATGCAATCCTCATCCGGGAGCGGCTTATGCCAACGACGCAGCCGACATTGTCGTACCGGAAA
TCGTGGTTATCAAAAAAGACGGGATCTGGCATGCCGAATTAAATGCTGATGCCATGCCGAAAATCCGCATCAACCGGATG
TATGGAGAAATTCTCAAGAACACATCGAACAAAACCAGTCTCAACACCCGTTTTCAGGAAGCCAAATGGTTGATCCGAAA
CATAAACCAGCGATTCGATACCATTTTGAGGGTTTCGGAAGCTATCATTGAACGGCAACAGAATTTTTTCACTTTCGGTC
CGACTTCCATGCGCCCTCTTGTTTTGCGCGAAATTGCTGATACACTAGGACTACACGAGAGCACCATCTCACGTGTGACA
ACCCAGAAATACATGCTGACACCGCTCGGCATTTTTGAGTTGAAATATTTTTTTGGCAGTCATATCGCTACGGAAGGAGG
AGGAGAAGCGTCTTCAACCGCGATCCGGGAAAAAATAAAACAGCTGATCGCCGGTGAAGACAGGAAAAAACCGTATTCCG
ACAACAAAATCGCACAAATGCTGGAAAAGGAAGGGCTGGTTATTGCAAGAAGAACCATTGCAAAATATCGCGACATGCTG
AAAATCCCGCCGGCCAGTTTGCGAAAAAGTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54, DNA binding domain (Sigma54_DBD)

(333-489)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(130-321)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

50.891

100

0.523