Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NB641_RS07485 Genome accession   NZ_CP098250
Coordinates   1567139..1568509 (+) Length   456 a.a.
NCBI ID   WP_269263826.1    Uniprot ID   -
Organism   Oxalobacter aliiformigenes strain HOxNP-3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1562139..1573509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB641_RS07470 (NB641_07415) - 1563138..1564337 (+) 1200 WP_269263824.1 multidrug effflux MFS transporter -
  NB641_RS07475 (NB641_07420) lplT 1564531..1565781 (-) 1251 WP_269263825.1 lysophospholipid transporter LplT -
  NB641_RS07480 (NB641_07425) alr 1566036..1567115 (+) 1080 WP_269265829.1 alanine racemase -
  NB641_RS07485 (NB641_07430) radA 1567139..1568509 (+) 1371 WP_269263826.1 DNA repair protein RadA Machinery gene
  NB641_RS07490 (NB641_07435) - 1568741..1570120 (-) 1380 WP_269263827.1 MATE family efflux transporter -
  NB641_RS07495 (NB641_07440) - 1571734..1572258 (-) 525 WP_269263828.1 cyclophilin-like fold protein -
  NB641_RS07500 (NB641_07445) - 1572438..1572740 (-) 303 WP_269263829.1 hypothetical protein -
  NB641_RS07505 (NB641_07450) - 1572754..1572942 (-) 189 WP_269263830.1 hypothetical protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48712.29 Da        Isoelectric Point: 7.9949

>NTDB_id=694714 NB641_RS07485 WP_269263826.1 1567139..1568509(+) (radA) [Oxalobacter aliiformigenes strain HOxNP-3]
MAKAKIQYTCTECGGVSSKWAGKCPACGQWNTLVETVVEPASSNRFSTNRQGIAQTAPVLSLSDIDAIDVPRFNSGIGEF
DRVLGGGLVPGGVVLIGGDPGIGKSTLLLQTLVNLAHSRNVLYVSGEESGSQVALRAKRLGLLAPNLQLQAEIQLEKILG
TLLEIKPEVAVIDSIQTLYSDALTSAPGSVAQVRECAAQLTRFAKQSGTTVIMVGHVTKEGALAGPRVLEHIVDTVLYFE
GDTHSSFRLIRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHERQIAGSCVMATLEGMRPLLVEIQALVDTSPTP
NARRLSVGLEQNRLAMLLAVMHRHANIAAYDQDVFINAVGGVRISEPAADLAVLMAIHSSLRNKPLPRGLVVFGEIGLAG
EIRPAPRGQDRLREAVKLGFSIALIPKSNAPKQPLEGLTVIGVERIDEAFDRIREL

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=694714 NB641_RS07485 WP_269263826.1 1567139..1568509(+) (radA) [Oxalobacter aliiformigenes strain HOxNP-3]
ATGGCGAAAGCGAAAATCCAGTATACCTGTACCGAATGCGGTGGCGTCAGCAGCAAATGGGCCGGGAAATGCCCGGCTTG
CGGCCAGTGGAATACGCTGGTCGAAACGGTCGTCGAACCGGCTTCGTCAAACCGCTTTTCCACCAACCGGCAAGGCATCG
CCCAGACGGCGCCCGTGCTGTCACTGTCGGATATCGATGCGATCGATGTTCCGCGTTTCAATTCGGGCATCGGCGAATTC
GACCGTGTGCTGGGGGGCGGACTGGTACCGGGAGGCGTCGTACTGATCGGCGGTGATCCGGGAATCGGAAAATCGACACT
CCTGCTGCAGACACTTGTCAATCTGGCCCATTCCAGAAACGTCCTGTATGTCAGCGGAGAGGAATCCGGTTCGCAGGTGG
CCCTTCGGGCAAAACGGCTCGGCCTGCTGGCACCGAATCTGCAACTGCAGGCGGAAATCCAGCTCGAAAAAATTCTGGGA
ACGCTTCTGGAGATCAAGCCTGAAGTCGCCGTTATCGACTCCATCCAGACCCTGTATTCCGATGCCCTGACTTCCGCACC
GGGATCGGTCGCACAGGTCAGGGAATGTGCCGCCCAGCTGACCCGCTTTGCCAAACAGTCAGGCACCACCGTCATCATGG
TAGGGCATGTCACCAAGGAAGGCGCACTGGCAGGCCCGCGCGTACTGGAACATATCGTCGATACCGTCCTGTATTTCGAA
GGCGACACGCATTCCAGTTTCCGCCTGATCCGCGCTTTCAAAAACCGTTTCGGCGCCGTCAACGAACTGGGCGTTTTCGC
CATGACGGAAAAGGGATTGAAAGGCGTATCCAATCCATCCGCCCTGTTTCTCTCGCAGCACGAAAGGCAGATCGCCGGCT
CGTGTGTCATGGCGACCCTGGAAGGCATGCGACCGTTGCTGGTCGAAATCCAGGCGCTGGTCGATACCTCGCCGACGCCC
AATGCACGCCGTCTTTCTGTCGGTCTGGAACAGAACCGGCTGGCCATGCTGCTGGCCGTCATGCACCGGCATGCCAATAT
CGCCGCCTACGATCAGGACGTTTTCATCAATGCGGTCGGAGGTGTCCGGATCAGCGAACCGGCAGCCGATCTGGCCGTTC
TCATGGCAATCCATTCATCGCTTCGCAACAAACCACTCCCGCGTGGACTGGTCGTATTCGGTGAAATCGGACTGGCCGGA
GAAATCCGCCCGGCACCCAGAGGACAGGACCGTTTGCGGGAAGCCGTCAAACTGGGCTTTTCGATTGCCCTGATTCCGAA
ATCCAATGCTCCCAAACAACCTCTTGAGGGGCTGACCGTCATCGGTGTGGAACGGATCGACGAAGCGTTCGACAGAATCA
GGGAATTGTAG

Domains

Predicted by InterproScan.

KaiC (ATPase)

(74-257)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.802

100

0.491
  radA Streptococcus mitis SK321

46.053

100

0.461
  radA Streptococcus pneumoniae Rx1

45.752

100

0.461
  radA Streptococcus pneumoniae TIGR4

45.752

100

0.461
  radA Streptococcus pneumoniae D39

45.752

100

0.461
  radA Streptococcus pneumoniae R6

45.752

100

0.461
  radA Streptococcus mitis NCTC 12261

45.934

99.781

0.458