Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NB636_RS07475 Genome accession   NZ_CP098247
Coordinates   1567994..1569469 (+) Length   491 a.a.
NCBI ID   WP_269277280.1    Uniprot ID   -
Organism   Oxalobacter aliiformigenes strain BA2     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1562994..1574469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB636_RS07450 (NB636_07415) - 1564523..1565539 (+) 1017 WP_269277268.1 KpsF/GutQ family sugar-phosphate isomerase -
  NB636_RS07455 (NB636_07420) - 1565539..1566066 (+) 528 WP_269277271.1 KdsC family phosphatase -
  NB636_RS07460 (NB636_07425) lptC 1566063..1566668 (+) 606 WP_269277274.1 LPS export ABC transporter periplasmic protein LptC -
  NB636_RS07465 (NB636_07430) lptA 1566685..1567239 (+) 555 WP_269277277.1 lipopolysaccharide transport periplasmic protein LptA -
  NB636_RS07470 (NB636_07435) lptB 1567236..1567979 (+) 744 WP_269265092.1 LPS export ABC transporter ATP-binding protein -
  NB636_RS07475 (NB636_07440) rpoN/rpoN1 1567994..1569469 (+) 1476 WP_269277280.1 RNA polymerase factor sigma-54 Machinery gene
  NB636_RS07480 (NB636_07445) hpf 1569528..1569875 (+) 348 WP_269277282.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NB636_RS07485 (NB636_07450) - 1570168..1570314 (-) 147 WP_269277285.1 hypothetical protein -
  NB636_RS07490 (NB636_07455) - 1570563..1570742 (-) 180 WP_269277288.1 hypothetical protein -
  NB636_RS07495 (NB636_07460) - 1570895..1571674 (+) 780 WP_269295594.1 tetratricopeptide repeat protein -
  NB636_RS07505 (NB636_07470) - 1572435..1572719 (-) 285 WP_269295595.1 linear amide C-N hydrolase -
  NB636_RS07510 (NB636_07475) - 1572716..1573537 (-) 822 WP_269295596.1 linear amide C-N hydrolase -
  NB636_RS07515 (NB636_07480) - 1573878..1574396 (+) 519 WP_269277296.1 DUF2059 domain-containing protein -

Sequence

Protein


Download         Length: 491 a.a.        Molecular weight: 55847.99 Da        Isoelectric Point: 5.9220

>NTDB_id=694671 NB636_RS07475 WP_269277280.1 1567994..1569469(+) (rpoN/rpoN1) [Oxalobacter aliiformigenes strain BA2]
MKQKLQTRLAQHFALTPQLQQSIRLLQLSSLELNEEIERALQENPLLERLDDPLANTTRFQADGSIIRQPVASGEPAYEE
NSHEPNGGPPDVSTNFTNESGNDEADHLIWDVPKPTDRNPDDERFLPQLEAPPETLKEHLLSQMRLAVRDQRKRALVELI
IDALDSNGYLLETLEEMLAWLPPELAIDRKELEEALCCIQTFDPPGVGARNSAECLAIQIRMMPNIPYIVRKRALNIVEN
HLKLFAQRDFIRLRKTLGCDDEDLLEAREVIQRCNPHPGAAYANDAADIVVPEIVVIKKDGIWHAELNADAMPKIRINRM
YGEILKNTSNKASLNTRFQEAKWLIRNINQRFDTILRVSEAIIERQQNFFTFGPTSMRPLVLREIADTLGLHESTISRVT
TQKYMLTPLGIFELKYFFGSHIATEGGGEASSTAIREKIKQLIAGEDRKKPYSDNKIAQMLEKEGLVIARRTIAKYRDML
KIPPASLRKSL

Nucleotide


Download         Length: 1476 bp        

>NTDB_id=694671 NB636_RS07475 WP_269277280.1 1567994..1569469(+) (rpoN/rpoN1) [Oxalobacter aliiformigenes strain BA2]
ATGAAACAGAAACTGCAAACCCGTCTTGCCCAGCATTTCGCTCTGACACCACAACTTCAGCAGTCCATCAGGCTTTTGCA
ACTGTCCAGCCTCGAACTGAACGAGGAAATCGAACGCGCACTGCAGGAAAACCCTCTTCTGGAAAGGCTTGATGACCCGC
TGGCCAACACGACCCGTTTCCAGGCAGACGGCTCCATCATCCGGCAACCTGTCGCATCAGGAGAACCCGCCTATGAAGAA
AATTCCCATGAACCAAACGGCGGACCTCCCGATGTATCGACAAATTTCACGAATGAATCCGGAAACGATGAAGCAGACCA
TCTGATCTGGGATGTTCCCAAACCGACCGACCGGAATCCAGACGACGAACGTTTCCTGCCACAACTGGAAGCCCCACCCG
AAACACTGAAGGAACATCTGCTATCCCAGATGAGACTGGCTGTTCGTGATCAGCGCAAACGCGCACTGGTCGAACTGATC
ATCGATGCGCTGGATTCCAACGGCTATCTTCTCGAGACTCTGGAAGAAATGCTCGCATGGCTGCCGCCGGAACTGGCTAT
CGACAGGAAAGAACTCGAAGAGGCTCTCTGTTGTATCCAGACCTTCGATCCGCCGGGAGTCGGCGCCAGAAACAGTGCCG
AATGCCTTGCCATCCAGATCAGGATGATGCCGAACATTCCGTACATTGTCCGCAAACGTGCCTTGAATATTGTCGAAAAC
CATCTGAAACTGTTTGCCCAGCGTGATTTCATCCGGCTGAGAAAAACCCTCGGGTGCGACGATGAAGACCTTCTGGAAGC
CCGGGAAGTCATTCAGCGATGCAATCCTCATCCGGGAGCGGCTTATGCCAACGACGCAGCCGACATTGTCGTACCGGAAA
TCGTGGTTATCAAAAAAGACGGGATCTGGCATGCCGAACTGAATGCTGATGCCATGCCGAAAATCCGCATCAACCGGATG
TATGGAGAAATTCTCAAGAACACATCGAACAAAGCCAGCCTCAACACCCGTTTTCAGGAAGCCAAATGGTTGATCCGAAA
CATAAACCAGCGATTCGATACCATTTTGAGGGTTTCGGAAGCCATCATTGAACGGCAACAGAATTTTTTCACTTTCGGTC
CGACTTCCATGCGCCCTCTTGTTTTGCGCGAAATTGCTGATACACTAGGACTACACGAGAGCACCATCTCACGTGTGACA
ACCCAGAAATACATGTTGACGCCGCTCGGTATTTTTGAGTTGAAATATTTTTTTGGCAGTCATATCGCTACGGAAGGAGG
AGGAGAAGCGTCTTCAACCGCGATCCGGGAAAAAATAAAACAGCTGATCGCCGGTGAAGACAGGAAAAAACCGTATTCCG
ACAACAAGATCGCACAAATGCTGGAAAAGGAAGGGCTGGTTATTGCAAGAAGAACCATTGCAAAATATCGCGACATGCTG
AAAATCCCGCCGGCCAGTTTGCGAAAAAGTTTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(130-321)

Sigma-54, DNA binding domain (Sigma54_DBD)

(334-489)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.089

100

0.525