Detailed information NTG0694669

Bioinformatically predicted

Overview

• Name: radA
• Type: Machinery gene
• Locus tag: NB636_RS03605
• Genome accession: NZ_CP098247
• Coordinates: 773726..775096 (-)
• Length: 456 a.a.
• NCBI ID: WP_269279095.1
• Uniprot ID: -
• Organism: Oxalobacter aliiformigenes strain BA2
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 768726..780096

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NB636_RS03590 (NB636_03585)	-	769408..769866 (+)	459	WP_269279087.1	hypothetical protein	-
NB636_RS03595 (NB636_03590)	-	769978..770502 (+)	525	WP_269279090.1	cyclophilin-like fold protein	-
NB636_RS03600 (NB636_03595)	-	772117..773496 (+)	1380	WP_269279093.1	MATE family efflux transporter	-
NB636_RS03605 (NB636_03600)	radA	773726..775096 (-)	1371	WP_269279095.1	DNA repair protein RadA	Machinery gene
NB636_RS03610 (NB636_03605)	alr	775120..776199 (-)	1080	WP_269279098.1	alanine racemase	-
NB636_RS03615 (NB636_03610)	lplT	776453..777703 (+)	1251	WP_269279101.1	lysophospholipid transporter LplT	-
NB636_RS03620 (NB636_03615)	-	777896..779095 (-)	1200	WP_269279104.1	multidrug effflux MFS transporter	-

Sequence

Protein

• Length: 456 a.a.
• Molecular weight: 48669.26 Da
• Isoelectric Point: 7.9949

>NTDB_id=694669 NB636_RS03605 WP_269279095.1 773726..775096(-) (radA) [Oxalobacter aliiformigenes strain BA2]
MAKAKIQYTCTECGGISSKWAGKCPACGQWNTLVETVVEPASSNRFSASRQGIAQTAPVLSLSDIDAIDVPRFNSGIGEF
DRVLGGGLVPGGVVLIGGDPGIGKSTLLLQTLVNLAHSKNVLYVSGEESGSQVALRAKRLGLLAPNLQLQAEIQLEKILG
TLLEIKPEVAVIDSIQTLYSDALTSAPGSVAQVRECAAQLTRFAKQSGTTVIMVGHVTKEGALAGPRVLEHIVDTVLYFE
GDTHSSFRLIRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHERQIAGSCVMATLEGMRPLLVEIQALVDTSPTP
NARRLSVGLEQNRLAMLLAVMHRHANIAAYDQDVFINAVGGVRISEPAADLAVLMAIHSSLRNRPLPRGLVVFGEIGLAG
EIRPAPRGQDRLREAVKLGFSIALIPKSNAPKQPLEGLTVIGVERIDEAFDRIREL

Nucleotide

• Length: 1371 bp

>NTDB_id=694669 NB636_RS03605 WP_269279095.1 773726..775096(-) (radA) [Oxalobacter aliiformigenes strain BA2]
ATGGCGAAAGCGAAAATCCAGTATACCTGTACCGAATGCGGCGGCATCAGCAGCAAATGGGCCGGAAAATGCCCGGCTTG
CGGCCAGTGGAACACGCTGGTCGAAACAGTCGTCGAACCGGCCTCGTCAAACCGCTTTTCCGCCAGCCGGCAGGGCATCG
CCCAGACGGCGCCCGTGCTGTCACTGTCGGATATCGACGCGATCGACGTTCCGCGTTTCAATTCGGGTATCGGCGAATTC
GACCGTGTGCTGGGTGGCGGACTGGTACCGGGAGGCGTCGTACTGATCGGCGGCGATCCGGGAATCGGAAAATCGACCCT
CCTGTTGCAGACGCTTGTCAATCTGGCCCATTCCAAAAACGTCCTGTATGTCAGCGGAGAGGAATCCGGCTCGCAGGTGG
CTCTTCGGGCAAAACGGCTCGGCCTGCTGGCGCCGAATCTGCAACTGCAGGCGGAAATCCAGCTCGAAAAAATTCTGGGA
ACGCTTCTGGAGATCAAGCCTGAAGTCGCGGTTATCGACTCCATCCAGACCCTGTATTCCGATGCCCTGACTTCCGCACC
GGGATCGGTCGCGCAGGTCAGGGAATGTGCCGCCCAGCTGACCCGCTTCGCCAAACAGTCAGGCACCACCGTCATCATGG
TGGGGCATGTCACCAAGGAAGGCGCGCTGGCGGGCCCGCGCGTACTGGAACATATCGTCGATACCGTTCTGTATTTCGAA
GGCGACACGCATTCCAGTTTCCGCCTGATCCGCGCTTTCAAAAACCGTTTCGGCGCCGTCAACGAACTGGGTGTTTTCGC
CATGACGGAAAAGGGACTGAAAGGCGTATCCAATCCGTCCGCCCTGTTTCTCTCGCAGCATGAAAGGCAGATCGCCGGCT
CGTGTGTCATGGCGACTCTGGAAGGCATGCGGCCGTTGCTGGTCGAAATCCAGGCGCTGGTCGATACATCGCCGACACCC
AATGCACGCCGTCTTTCTGTCGGTCTGGAACAGAACCGGCTGGCCATGCTGCTGGCCGTCATGCACCGGCATGCCAATAT
CGCCGCCTACGATCAAGACGTTTTCATCAACGCGGTCGGAGGTGTCCGGATCAGCGAACCGGCGGCCGATCTGGCCGTTC
TCATGGCGATCCATTCATCGCTTCGCAACAGACCGCTTCCGCGTGGACTGGTCGTATTCGGTGAAATCGGACTGGCCGGA
GAAATCCGCCCGGCACCCAGAGGACAGGATCGTTTGCGGGAAGCCGTCAAACTGGGCTTTTCGATTGCCCTGATTCCGAA
ATCCAATGCTCCCAAACAACCTCTCGAAGGGCTGACCGTCATCGGTGTGGAACGGATCGACGAAGCGTTCGACAGAATCA
GGGAATTGTAG

Domains

Predicted by InterproScan.

• Rubredoxin metal binding domain (Zn_ribbon_LapB) (8-35)

• KaiC (ATPase) (74-257)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radA	Bacillus subtilis subsp. subtilis str. 168	49.02	100	0.493
radA	Streptococcus pneumoniae Rx1	45.534	100	0.458
radA	Streptococcus pneumoniae R6	45.534	100	0.458
radA	Streptococcus pneumoniae TIGR4	45.534	100	0.458
radA	Streptococcus pneumoniae D39	45.534	100	0.458
radA	Streptococcus mitis SK321	45.833	100	0.458
radA	Streptococcus mitis NCTC 12261	45.714	99.781	0.456