Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   SR187_RS09075 Genome accession   NZ_AP018400
Coordinates   1911455..1912819 (-) Length   454 a.a.
NCBI ID   WP_120172334.1    Uniprot ID   -
Organism   Streptococcus ruminantium strain GUT-187     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1906455..1917819
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR187_RS09050 (SR187_9340) gltX 1906847..1908301 (-) 1455 WP_120172329.1 glutamate--tRNA ligase -
  SR187_RS09055 (SR187_9345) - 1908457..1909146 (-) 690 WP_120172330.1 LiaF transmembrane domain-containing protein -
  SR187_RS09060 (SR187_9350) - 1909152..1909598 (-) 447 WP_120172332.1 LytTR family DNA-binding domain-containing protein -
  SR187_RS09065 (SR187_9355) - 1910006..1910725 (-) 720 WP_024532696.1 TIGR00266 family protein -
  SR187_RS09070 (SR187_9360) - 1910836..1911330 (-) 495 WP_024532695.1 carbonic anhydrase -
  SR187_RS09075 (SR187_9365) radA 1911455..1912819 (-) 1365 WP_120172334.1 DNA repair protein RadA Machinery gene
  SR187_RS09080 (SR187_9370) - 1913345..1913788 (-) 444 WP_024532693.1 dUTP diphosphatase -
  SR187_RS09085 (SR187_9375) - 1914225..1915079 (-) 855 WP_120172336.1 helix-turn-helix domain-containing protein -
  SR187_RS09090 - 1915410..1915778 (+) 369 WP_120172337.1 hypothetical protein -
  SR187_RS09095 (SR187_9385) - 1915778..1916071 (+) 294 WP_120172339.1 bacteriocin immunity protein -

Sequence

Protein


Download         Length: 454 a.a.        Molecular weight: 49752.29 Da        Isoelectric Point: 6.8567

>NTDB_id=69466 SR187_RS09075 WP_120172334.1 1911455..1912819(-) (radA) [Streptococcus ruminantium strain GUT-187]
MIAKKKTTFVCQSCEYHSPKYLGRCPNCGSWSSFVEEVAVTEVKNERVSLTGEKTRPMKLNEVSSIQVSRTKTSMEEFNR
VLGGGVVPGSLVLIGGDPGIGKSTLLLQVSTQLSTIGTVLYVSGEESAQQIKLRAERLGDIDSEFYLYAETNMQSIRKEI
EKIKPDFLIIDSIQTIMSPDISSVQGSVSQVREVTNELMQMAKTNNIATFIVGHMTKEGTLAGPRTLEHMVDTVLYFEGE
RQHTFRILRAVKNRFGSTNEIGIFEMQSQGLVEVLNPSEVFLEERLDGATGSAIVVTMEGTRPILAEVQALVTPTMFGNA
KRTTTGLDFNRASLIMAVLEKRAGLLLQNQDAYLKSAGGVKLDEPAIDLAVAVALASSYKDKPTNPQECFIGEIGLTGEI
RRVNRIEQRINEAAKLGFTKVYAPKNSLTGIKVPKEIMAVGVTTIGEVLQKVFN

Nucleotide


Download         Length: 1365 bp        

>NTDB_id=69466 SR187_RS09075 WP_120172334.1 1911455..1912819(-) (radA) [Streptococcus ruminantium strain GUT-187]
ATCATCGCTAAGAAAAAAACAACCTTTGTCTGTCAGTCCTGCGAATACCACTCGCCCAAATACCTAGGGCGCTGTCCCAA
CTGTGGTTCTTGGTCGTCCTTTGTAGAGGAAGTGGCAGTTACAGAAGTTAAGAATGAGCGAGTTAGTTTGACAGGCGAGA
AGACCCGACCAATGAAGCTAAATGAAGTTTCCTCTATCCAAGTGTCTCGTACAAAGACTAGTATGGAAGAGTTCAATCGC
GTTCTGGGAGGAGGTGTAGTGCCAGGGAGTTTGGTTCTTATTGGTGGAGATCCGGGTATAGGCAAGTCCACCTTGCTCTT
GCAGGTTTCAACTCAGCTATCAACTATTGGTACTGTTCTTTATGTATCAGGAGAAGAGTCTGCCCAACAAATCAAGCTAC
GAGCAGAGCGCTTAGGCGATATTGACAGCGAGTTTTATCTCTATGCAGAGACCAATATGCAGAGTATCCGCAAGGAGATT
GAAAAAATCAAGCCGGATTTTTTGATTATTGATTCTATTCAGACGATTATGAGTCCGGATATTTCTAGCGTGCAGGGATC
AGTCAGTCAGGTGCGTGAAGTGACCAATGAGCTCATGCAGATGGCCAAGACCAATAATATCGCAACCTTTATTGTCGGTC
ACATGACCAAGGAAGGAACTCTTGCAGGACCGCGTACTCTAGAACACATGGTAGATACGGTGCTTTATTTTGAGGGAGAG
CGCCAGCATACCTTCCGCATCTTGCGAGCGGTCAAAAATCGTTTTGGATCAACCAATGAGATCGGAATTTTTGAAATGCA
GTCTCAGGGCTTGGTAGAGGTTCTCAATCCTAGCGAAGTCTTTTTGGAAGAACGTTTGGATGGAGCGACAGGTTCTGCCA
TTGTTGTTACCATGGAGGGAACCAGACCTATCTTAGCAGAAGTACAAGCCTTGGTGACTCCGACCATGTTTGGTAATGCT
AAGCGGACGACAACAGGACTAGACTTCAATCGGGCGAGCTTAATTATGGCAGTTTTGGAAAAAAGGGCAGGTCTGCTTTT
ACAAAATCAAGATGCTTACCTAAAATCAGCAGGTGGTGTCAAGTTAGATGAGCCGGCGATTGATCTTGCGGTAGCAGTTG
CCCTCGCTTCCAGCTACAAGGATAAGCCCACCAATCCTCAGGAGTGTTTTATCGGGGAAATCGGTCTGACAGGTGAAATA
CGCCGTGTCAATCGGATCGAACAGCGCATCAATGAAGCGGCTAAGTTGGGATTTACAAAAGTCTATGCTCCCAAAAATTC
CTTGACAGGTATCAAGGTCCCTAAAGAAATTATGGCTGTAGGAGTGACAACAATTGGTGAAGTTTTGCAAAAAGTATTTA
ATTAG

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(362-426)

AAA domain (AAA_25)

(63-219)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

90.265

99.559

0.899
  radA Streptococcus pneumoniae D39

90.265

99.559

0.899
  radA Streptococcus pneumoniae R6

90.265

99.559

0.899
  radA Streptococcus pneumoniae TIGR4

90.265

99.559

0.899
  radA Streptococcus mitis NCTC 12261

90.265

99.559

0.899
  radA Streptococcus mitis SK321

90.044

99.559

0.896
  radA Bacillus subtilis subsp. subtilis str. 168

62.252

99.78

0.621

Multiple sequence alignment