Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NB644_RS05975 Genome accession   NZ_CP098246
Coordinates   1269898..1271268 (+) Length   456 a.a.
NCBI ID   WP_005880752.1    Uniprot ID   -
Organism   Oxalobacter formigenes strain HOxSLD-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1264898..1276268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB644_RS05960 (NB644_05935) - 1265520..1267139 (+) 1620 WP_005880755.1 autotransporter outer membrane beta-barrel domain-containing protein -
  NB644_RS05965 (NB644_05940) lplT 1267255..1268508 (-) 1254 WP_005880754.1 lysophospholipid transporter LplT -
  NB644_RS05970 (NB644_05945) alr 1268779..1269858 (+) 1080 WP_005880753.1 alanine racemase -
  NB644_RS05975 (NB644_05950) radA 1269898..1271268 (+) 1371 WP_005880752.1 DNA repair protein RadA Machinery gene
  NB644_RS05980 (NB644_05955) - 1271314..1271871 (-) 558 WP_005880751.1 DapH/DapD/GlmU-related protein -
  NB644_RS05985 (NB644_05960) - 1271931..1272443 (-) 513 WP_231284488.1 cyclophilin-like fold protein -
  NB644_RS05990 (NB644_05965) - 1272647..1273093 (-) 447 WP_196793299.1 rhodanese-like domain-containing protein -
  NB644_RS05995 (NB644_05970) hpnE 1273264..1274580 (-) 1317 WP_005880746.1 hydroxysqualene dehydroxylase HpnE -
  NB644_RS06000 (NB644_05975) hpnD 1274573..1275409 (-) 837 WP_005880744.1 presqualene diphosphate synthase HpnD -
  NB644_RS06005 (NB644_05980) cadR 1275534..1276031 (-) 498 WP_269310475.1 Cd(II)/Pb(II)-responsive transcriptional regulator -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48699.24 Da        Isoelectric Point: 7.9845

>NTDB_id=694658 NB644_RS05975 WP_005880752.1 1269898..1271268(+) (radA) [Oxalobacter formigenes strain HOxSLD-2]
MAKAKIQYTCTECGGISSKWAGKCPACGQWNTLVETVIESSANRFSTNRQGIAQTAPVLSLADIDAIDVPRFESGINEFD
RVLGGGLVSGGVVLIGGDPGIGKSTLLLQTLVNLAQHKNVLYVSGEESGAQVALRAKRLGLTAQNLQLQAEIQLEKIIGT
LDKLKPEVAVVDSIQTIYSDALTSAPGSVAQVRECAAQLTRFAKQSGTTIIMVGHVTKEGALAGPRVLEHIVDTVLYFEG
DAHSSFRLIRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHQREIAGSCVMATLEGMRPLLVEIQALVDASPTPN
ARRLSVGLEQNRLAMLLAVMHRHANIAAYDQDVFINAVGGVKISEPAADLAVLLAINSSLRNKPLPRGLVVFGEVGLAGE
IRPAPRGQDRLKEAVKLGFSMAIIPKANAPKQPFEGLTVIGVERIDEAFDRLRELQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=694658 NB644_RS05975 WP_005880752.1 1269898..1271268(+) (radA) [Oxalobacter formigenes strain HOxSLD-2]
ATGGCTAAAGCGAAAATCCAGTATACCTGTACCGAATGTGGCGGCATCAGCAGCAAATGGGCAGGCAAGTGCCCGGCCTG
CGGGCAATGGAATACATTGGTCGAAACGGTCATCGAGTCCTCTGCCAACCGTTTTTCAACCAATCGTCAGGGAATTGCAC
AGACGGCACCGGTCCTGTCCCTAGCCGATATCGACGCAATAGACGTTCCCCGTTTCGAATCGGGTATCAATGAGTTCGAC
CGGGTACTCGGCGGAGGACTTGTGTCCGGCGGGGTCGTCCTGATCGGCGGCGATCCCGGTATCGGCAAATCGACACTGCT
TTTGCAGACACTGGTCAATCTGGCTCAACACAAGAACGTGCTCTACGTCAGCGGGGAAGAGTCCGGCGCGCAGGTCGCGC
TTCGCGCCAAACGTTTGGGGCTAACTGCCCAGAACCTCCAGTTACAGGCTGAAATTCAGCTGGAGAAAATCATCGGCACG
CTGGACAAGCTGAAACCGGAAGTCGCCGTGGTCGATTCGATCCAGACCATTTATTCCGATGCGCTGACATCCGCTCCGGG
GTCTGTCGCACAGGTCCGGGAATGCGCTGCCCAGCTGACCCGTTTTGCCAAACAGTCGGGTACGACGATTATCATGGTCG
GGCATGTCACCAAGGAAGGGGCACTGGCAGGCCCCCGCGTACTGGAACATATCGTCGATACCGTCCTGTATTTCGAAGGC
GATGCCCATTCCAGCTTCCGCCTGATCCGCGCGTTCAAAAACCGTTTCGGGGCGGTCAACGAACTGGGCGTTTTCGCCAT
GACGGAAAAGGGATTGAAGGGGGTATCCAATCCGTCTGCCCTGTTCCTCTCGCAGCATCAGCGCGAAATCGCCGGTTCCT
GCGTCATGGCGACGCTGGAAGGCATGCGGCCGTTACTGGTCGAAATTCAGGCTCTGGTCGATGCATCCCCGACCCCAAAC
GCCCGCAGATTGTCTGTCGGGCTGGAACAGAACCGGCTGGCGATGCTGTTGGCCGTCATGCACCGGCATGCCAATATCGC
CGCTTACGATCAGGATGTTTTCATCAATGCGGTAGGCGGTGTCAAAATCAGCGAGCCAGCTGCCGATCTGGCCGTTTTGC
TGGCCATCAATTCATCCCTGCGGAACAAGCCCTTGCCGAGAGGACTCGTTGTTTTCGGCGAAGTCGGGCTTGCCGGTGAA
ATCCGGCCTGCGCCGAGAGGGCAGGATCGCCTGAAAGAAGCGGTCAAACTCGGTTTTTCAATGGCGATCATTCCAAAAGC
CAATGCACCGAAACAGCCGTTTGAAGGTCTGACTGTCATTGGCGTTGAACGGATCGATGAAGCGTTCGATCGCCTGCGGG
AGCTTCAGTAA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(73-256)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.673

100

0.5
  radA Streptococcus mitis SK321

46.256

99.561

0.461
  radA Streptococcus pneumoniae Rx1

45.952

100

0.461
  radA Streptococcus pneumoniae D39

45.952

100

0.461
  radA Streptococcus pneumoniae R6

45.952

100

0.461
  radA Streptococcus pneumoniae TIGR4

45.952

100

0.461
  radA Streptococcus mitis NCTC 12261

46.137

99.342

0.458