Detailed information NTG0694637

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: NB642_RS00880
• Genome accession: NZ_CP098245
• Coordinates: 196148..197203 (+)
• Length: 351 a.a.
• NCBI ID: WP_005882714.1
• Uniprot ID: C3XCV6
• Organism: Oxalobacter formigenes strain HOxSLD-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 191148..202203

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NB642_RS00855 (NB642_00855)	-	191832..192080 (-)	249	WP_005882726.1	YfhL family 4Fe-4S dicluster ferredoxin	-
NB642_RS00860 (NB642_00860)	coaD	192140..192628 (-)	489	WP_005882724.1	pantetheine-phosphate adenylyltransferase	-
NB642_RS00865 (NB642_00865)	rsmD	192667..193308 (-)	642	WP_050757806.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
NB642_RS00870 (NB642_00870)	-	193345..194694 (-)	1350	WP_005882719.1	M16 family metallopeptidase	-
NB642_RS00875 (NB642_00875)	-	194733..196076 (-)	1344	WP_269310576.1	M16 family metallopeptidase	-
NB642_RS00880 (NB642_00880)	pilA	196148..197203 (+)	1056	WP_005882714.1	signal recognition particle-docking protein FtsY	Machinery gene
NB642_RS00885 (NB642_00885)	-	197215..197895 (+)	681	WP_036604126.1	cell division ATP-binding protein FtsE	-
NB642_RS00890 (NB642_00890)	-	197892..198821 (+)	930	WP_005882710.1	cell division protein FtsX	-
NB642_RS00895 (NB642_00895)	rpoH	199030..199929 (+)	900	WP_005882708.1	RNA polymerase sigma factor RpoH	-
NB642_RS00900 (NB642_00900)	-	199951..200727 (-)	777	WP_050757757.1	methyltransferase domain-containing protein	-
NB642_RS00905 (NB642_00905)	-	200906..201667 (+)	762	WP_005882704.1	phosphoribosyltransferase family protein	-
NB642_RS00910 (NB642_00910)	-	201669..202139 (+)	471	WP_005882702.1	tRNA (cytidine(34)-2'-O)-methyltransferase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 37616.89 Da
• Isoelectric Point: 4.9325

>NTDB_id=694637 NB642_RS00880 WP_005882714.1 196148..197203(+) (pilA) [Oxalobacter formigenes strain HOxSLD-1]
MFSFFKKKTGDIPPEQDNSESSLADSSLTPHESSEVSPGNIDASSGIAKQDTEKKQSWLSRLKSGLAKTSANLNIFGGTT
IDEELFEELETALLVSDVGMPATEYLLDELRRKVKEEKLTQPSEIKTALAALLTDLLAPLQKNLEIGRHNPLVIMMAGVN
GAGKTTTIGKLAQHLQNNDQTVLLAAGDTFRAAAREQLAVWGDRNKITVIAQESGDPAAVAFDAVQSAKAKNINVVMVDT
AGRLPTQSHLMEELKKVKRVIGKGMDEAPHEIILVIDGNTGQNALAQVKAFDETLGLTGLIVTKLDGTPKGGILAAIAKN
HPVPVYFIGVGEKIDDLQPFVAEEFSNALLS

Nucleotide

• Length: 1056 bp

>NTDB_id=694637 NB642_RS00880 WP_005882714.1 196148..197203(+) (pilA) [Oxalobacter formigenes strain HOxSLD-1]
ATGTTTAGCTTCTTCAAAAAGAAAACCGGCGATATTCCGCCCGAACAGGATAACAGTGAATCCTCTTTGGCAGACTCGTC
ATTGACGCCACATGAGTCTTCTGAAGTCTCTCCCGGTAATATAGATGCATCTTCAGGCATTGCCAAGCAAGATACTGAAA
AAAAGCAATCCTGGCTGAGTCGCCTCAAAAGCGGGCTTGCCAAAACCTCGGCCAATCTGAATATTTTCGGTGGAACCACC
ATCGATGAAGAATTGTTCGAAGAACTGGAAACAGCTTTGCTCGTTTCAGATGTCGGAATGCCCGCCACGGAATATCTTCT
TGACGAACTTCGCCGGAAAGTGAAAGAAGAAAAGCTGACGCAGCCTTCTGAAATCAAGACGGCACTTGCCGCTTTATTGA
CCGATCTGCTGGCTCCCTTGCAAAAAAACCTCGAAATCGGCCGCCATAACCCTCTGGTTATCATGATGGCCGGTGTGAAT
GGCGCAGGTAAAACAACGACCATCGGCAAACTGGCGCAGCACCTGCAAAACAACGATCAGACCGTCCTTCTGGCAGCCGG
TGACACTTTCCGTGCTGCCGCACGGGAACAGCTTGCCGTCTGGGGCGACCGGAATAAAATTACCGTCATCGCGCAGGAAT
CCGGCGATCCGGCTGCCGTCGCTTTCGACGCCGTTCAGTCAGCAAAAGCAAAAAACATCAACGTCGTCATGGTCGACACG
GCAGGCAGGTTGCCGACGCAATCGCATTTGATGGAAGAACTTAAAAAGGTAAAACGGGTCATTGGTAAAGGGATGGATGA
AGCGCCACACGAAATCATCCTTGTCATCGATGGAAACACGGGGCAAAACGCACTGGCACAGGTCAAGGCATTCGACGAAA
CCCTGGGCCTGACAGGCCTGATCGTCACGAAGCTGGACGGCACGCCGAAAGGCGGCATTCTGGCTGCCATCGCGAAAAAT
CATCCTGTTCCCGTTTATTTTATCGGTGTCGGTGAAAAAATCGACGATTTGCAACCCTTTGTTGCCGAAGAATTTTCAAA
CGCATTGTTGAGCTAA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (74-130)

• SRP54-type protein, GTPase domain (SRP54) (152-350)

3D structure

• AlphaFold DB: C3XCV6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	60.526	86.61	0.524