Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   NB639_RS07235 Genome accession   NZ_CP098244
Coordinates   1613873..1615345 (+) Length   490 a.a.
NCBI ID   WP_269307259.1    Uniprot ID   -
Organism   Oxalobacter formigenes strain OxWR1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1608873..1620345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB639_RS07210 (NB639_07195) - 1610394..1611410 (+) 1017 WP_269307256.1 KpsF/GutQ family sugar-phosphate isomerase -
  NB639_RS07215 (NB639_07200) - 1611407..1611937 (+) 531 WP_269307882.1 KdsC family phosphatase -
  NB639_RS07220 (NB639_07205) lptC 1611970..1612539 (+) 570 WP_269307257.1 LPS export ABC transporter periplasmic protein LptC -
  NB639_RS07225 (NB639_07210) lptA 1612561..1613115 (+) 555 WP_269307258.1 lipopolysaccharide transport periplasmic protein LptA -
  NB639_RS07230 (NB639_07215) lptB 1613115..1613858 (+) 744 WP_005881474.1 LPS export ABC transporter ATP-binding protein -
  NB639_RS07235 (NB639_07220) rpoN/rpoN1 1613873..1615345 (+) 1473 WP_269307259.1 RNA polymerase factor sigma-54 Machinery gene
  NB639_RS07240 (NB639_07225) hpf 1615413..1615763 (+) 351 WP_005881478.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  NB639_RS07245 (NB639_07230) - 1615993..1616352 (+) 360 WP_005881480.1 DsrE family protein -
  NB639_RS07255 (NB639_07240) - 1617109..1617972 (+) 864 WP_269307260.1 hypothetical protein -
  NB639_RS07260 (NB639_07245) - 1617923..1619737 (+) 1815 WP_269307261.1 autotransporter outer membrane beta-barrel domain-containing protein -

Sequence

Protein


Download         Length: 490 a.a.        Molecular weight: 55446.07 Da        Isoelectric Point: 5.7266

>NTDB_id=694626 NB639_RS07235 WP_269307259.1 1613873..1615345(+) (rpoN/rpoN1) [Oxalobacter formigenes strain OxWR1]
MKQKLQTSFSQHLALTPQLQQSIRLLQLSSQELNQELEQALQENPLLERVDDPLATSTRLSGDGSVISTTKQPETASHTD
SGDFSGERTGDVSSNEEHTSDSERMDSLWNVPVPSERQPDDERSKPQIEAPPESLREHLISQMRLSVISQRQRALVELII
DALDANGFLQESLPEMLEWLPQELDISIKELEEALSCVQDFEPAGVGARTSAECLAIQIRLLPRIPYVVRKRAMNIVENH
LELFARHDFVRLKKVLECDDEDLKEAQEVIHRCNPHPGAIYATDTAETVIPEIIVSKKENCWVAELNPDAMPKIRVNQLY
ANILRESGSKAALSVQLREAKWLIRNINQRYETILKTSQAIVERQQNFFSFGATSMRPLVLREIADTLGLHESTISRVSN
QKFMRTPHGILELKYFFGSSVATETGGEASSTAIREKIRQLIETEDKKKPLSDNRIAQLLERQGLVVARRTVAKYRDILK
IPPASLRKKL

Nucleotide


Download         Length: 1473 bp        

>NTDB_id=694626 NB639_RS07235 WP_269307259.1 1613873..1615345(+) (rpoN/rpoN1) [Oxalobacter formigenes strain OxWR1]
ATGAAACAAAAACTTCAAACCAGCTTTAGCCAACATCTAGCCTTAACCCCGCAATTACAGCAGTCCATCCGTCTTCTGCA
ACTGTCGAGCCAGGAACTGAATCAGGAACTGGAACAGGCCTTGCAGGAAAATCCTCTTCTGGAAAGAGTGGATGATCCTT
TAGCCACTTCAACGCGCCTGTCGGGGGATGGTTCTGTCATATCGACGACAAAACAGCCGGAAACAGCCAGCCATACCGAT
TCCGGAGATTTTTCCGGCGAAAGAACGGGTGACGTTTCCAGCAATGAAGAACATACCTCCGATTCAGAACGGATGGACAG
TCTCTGGAATGTCCCGGTACCATCCGAGCGTCAACCGGACGACGAACGTTCCAAACCCCAAATCGAAGCACCCCCTGAGT
CCTTGCGCGAACATTTGATTTCGCAAATGAGACTGTCCGTCATCAGCCAGCGCCAGCGTGCATTGGTTGAATTGATCATC
GATGCCCTGGATGCCAATGGTTTCCTGCAGGAGAGCTTGCCTGAAATGCTCGAATGGCTCCCTCAAGAACTCGATATCAG
CATAAAAGAACTGGAAGAAGCCCTCTCCTGCGTACAGGATTTCGAACCTGCCGGGGTAGGTGCCAGAACGAGTGCTGAAT
GCCTCGCCATCCAGATCCGTCTGCTGCCCCGTATCCCGTATGTCGTCCGGAAACGGGCCATGAATATCGTTGAAAACCAC
CTCGAGCTGTTTGCACGACACGATTTTGTCCGTTTGAAAAAAGTTCTGGAATGTGACGATGAAGACCTGAAGGAAGCTCA
GGAAGTCATTCACCGATGCAATCCACATCCTGGGGCGATATATGCTACCGACACGGCTGAAACGGTCATTCCTGAAATTA
TCGTCAGCAAAAAGGAAAATTGCTGGGTTGCCGAGCTGAATCCTGACGCCATGCCGAAAATACGGGTCAATCAGTTGTAT
GCAAATATTTTGAGAGAATCGGGCAGCAAGGCAGCGCTTTCAGTTCAGCTTCGGGAGGCTAAATGGTTGATCAGGAATAT
AAATCAGCGATATGAAACCATACTCAAAACCAGTCAGGCCATCGTGGAGCGCCAGCAGAATTTCTTCTCTTTTGGGGCAA
CATCAATGCGCCCTCTTGTTTTGCGTGAAATAGCTGATACACTAGGACTACACGAGAGCACAATATCCCGTGTAAGCAAC
CAGAAATTCATGCGAACCCCGCATGGCATTTTAGAGTTGAAATACTTTTTTGGAAGTTCGGTCGCAACGGAAACTGGTGG
GGAAGCGTCTTCTACAGCCATTCGGGAAAAAATCAGGCAACTGATTGAAACCGAAGACAAGAAAAAGCCACTTTCTGACA
ACAGGATTGCACAGCTTCTGGAAAGACAGGGTCTGGTCGTGGCAAGAAGAACGGTGGCAAAATATCGCGACATTCTGAAA
ATACCTCCAGCTTCCCTGAGAAAAAAATTGTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(128-320)

Sigma-54, DNA binding domain (Sigma54_DBD)

(333-489)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

51.383

100

0.531