Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   NB639_RS04875 Genome accession   NZ_CP098244
Coordinates   1103962..1105332 (-) Length   456 a.a.
NCBI ID   WP_005880752.1    Uniprot ID   -
Organism   Oxalobacter formigenes strain OxWR1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1098962..1110332
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NB639_RS04845 (NB639_04830) cadR 1099199..1099711 (+) 513 WP_005880743.1 Cd(II)/Pb(II)-responsive transcriptional regulator -
  NB639_RS04850 (NB639_04835) hpnD 1099822..1100658 (+) 837 WP_269307808.1 presqualene diphosphate synthase HpnD -
  NB639_RS04855 (NB639_04840) hpnE 1100645..1101964 (+) 1320 WP_332880444.1 hydroxysqualene dehydroxylase HpnE -
  NB639_RS04860 (NB639_04845) - 1102080..1102583 (+) 504 WP_269307809.1 rhodanese-like domain-containing protein -
  NB639_RS04865 (NB639_04850) - 1102787..1103299 (+) 513 WP_269307810.1 cyclophilin-like fold protein -
  NB639_RS04870 (NB639_04855) - 1103359..1103916 (+) 558 WP_269307811.1 DapH/DapD/GlmU-related protein -
  NB639_RS04875 (NB639_04860) radA 1103962..1105332 (-) 1371 WP_005880752.1 DNA repair protein RadA Machinery gene
  NB639_RS04880 (NB639_04865) alr 1105372..1106451 (-) 1080 WP_005880753.1 alanine racemase -
  NB639_RS04885 (NB639_04870) lplT 1106722..1107975 (+) 1254 WP_005880754.1 lysophospholipid transporter LplT -
  NB639_RS04890 (NB639_04875) - 1108091..1109710 (-) 1620 WP_005880755.1 autotransporter outer membrane beta-barrel domain-containing protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48699.24 Da        Isoelectric Point: 7.9845

>NTDB_id=694624 NB639_RS04875 WP_005880752.1 1103962..1105332(-) (radA) [Oxalobacter formigenes strain OxWR1]
MAKAKIQYTCTECGGISSKWAGKCPACGQWNTLVETVIESSANRFSTNRQGIAQTAPVLSLADIDAIDVPRFESGINEFD
RVLGGGLVSGGVVLIGGDPGIGKSTLLLQTLVNLAQHKNVLYVSGEESGAQVALRAKRLGLTAQNLQLQAEIQLEKIIGT
LDKLKPEVAVVDSIQTIYSDALTSAPGSVAQVRECAAQLTRFAKQSGTTIIMVGHVTKEGALAGPRVLEHIVDTVLYFEG
DAHSSFRLIRAFKNRFGAVNELGVFAMTEKGLKGVSNPSALFLSQHQREIAGSCVMATLEGMRPLLVEIQALVDASPTPN
ARRLSVGLEQNRLAMLLAVMHRHANIAAYDQDVFINAVGGVKISEPAADLAVLLAINSSLRNKPLPRGLVVFGEVGLAGE
IRPAPRGQDRLKEAVKLGFSMAIIPKANAPKQPFEGLTVIGVERIDEAFDRLRELQ

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=694624 NB639_RS04875 WP_005880752.1 1103962..1105332(-) (radA) [Oxalobacter formigenes strain OxWR1]
ATGGCTAAAGCGAAAATCCAGTATACCTGTACCGAATGTGGCGGCATCAGCAGCAAATGGGCAGGCAAGTGCCCGGCCTG
CGGGCAATGGAATACATTGGTCGAAACGGTCATCGAGTCCTCTGCCAACCGTTTTTCAACCAATCGTCAGGGAATTGCAC
AGACGGCACCGGTCCTGTCCCTAGCCGATATCGACGCAATAGACGTTCCCCGTTTCGAATCGGGTATCAATGAGTTCGAC
CGGGTACTCGGCGGAGGACTTGTGTCCGGCGGGGTCGTCCTGATCGGCGGCGATCCCGGTATCGGCAAATCGACACTGCT
TTTGCAGACACTGGTCAATCTGGCTCAACACAAGAACGTGCTCTACGTCAGCGGGGAAGAGTCCGGCGCGCAGGTCGCGC
TTCGCGCCAAACGTTTGGGGCTAACTGCCCAGAACCTCCAGTTACAGGCTGAAATTCAGCTGGAGAAAATCATCGGCACG
CTGGACAAGCTGAAACCGGAAGTCGCCGTGGTCGATTCGATCCAGACCATTTATTCCGATGCGCTGACATCCGCTCCGGG
GTCTGTCGCACAGGTCCGGGAATGCGCTGCCCAGCTGACCCGTTTTGCCAAACAGTCGGGTACGACGATTATCATGGTCG
GGCATGTCACCAAGGAAGGGGCACTGGCAGGCCCCCGCGTACTGGAACATATCGTCGATACCGTCCTGTATTTCGAAGGC
GATGCCCATTCCAGCTTCCGCCTGATCCGCGCGTTCAAAAACCGTTTCGGGGCGGTCAACGAACTGGGCGTTTTCGCCAT
GACGGAAAAGGGATTGAAGGGGGTATCCAATCCGTCTGCCCTGTTCCTCTCGCAGCATCAGCGCGAAATCGCCGGTTCCT
GCGTCATGGCGACGCTGGAAGGCATGCGGCCGTTACTGGTCGAAATTCAGGCTCTGGTCGATGCATCCCCGACCCCAAAC
GCCCGCAGATTGTCTGTCGGGCTGGAACAGAACCGGCTGGCGATGCTGTTGGCCGTCATGCACCGGCATGCCAATATCGC
CGCTTACGATCAGGATGTTTTCATCAATGCGGTAGGCGGTGTCAAAATCAGCGAGCCAGCTGCCGATCTGGCCGTTTTGC
TGGCCATCAATTCATCCCTGCGGAACAAGCCCTTGCCGAGAGGACTCGTTGTTTTCGGCGAAGTCGGGCTTGCCGGTGAA
ATCCGGCCTGCGCCGAGAGGGCAGGATCGCCTGAAAGAAGCGGTCAAACTCGGTTTTTCAATGGCGATCATTCCAAAGGC
CAATGCACCGAAACAGCCGTTTGAAGGTCTGACTGTCATTGGCGTTGAACGGATCGATGAAGCGTTCGACCGCCTGCGGG
AGCTTCAGTAA

Domains

Predicted by InterproScan.

KaiC (ATPase)

(73-256)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.673

100

0.5
  radA Streptococcus mitis SK321

46.256

99.561

0.461
  radA Streptococcus pneumoniae Rx1

45.952

100

0.461
  radA Streptococcus pneumoniae D39

45.952

100

0.461
  radA Streptococcus pneumoniae R6

45.952

100

0.461
  radA Streptococcus pneumoniae TIGR4

45.952

100

0.461
  radA Streptococcus mitis NCTC 12261

46.137

99.342

0.458